View source for MENGO Lignin degradation

Working group
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==Trudy_5/11/2011==
===BIOLOGICAL PROCESS ONTOLOGY===


====GO:0046274: lignin catabolic process====

namespace: biological process

def: Already in GO

Add Synonym:Ligninolysis

[GOC:MENGO_TT]

====GO:XXXXXX109:regulation of lignin catabolic process

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of cell wall lignin biosynthesis

regulates : GO:0046274: lignin catabolic process

[GOC:MENGO_TT]

====GO:XXXXXX110:positive regulation of lignin catabolic process====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of  cell wall cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin catabolic process

[GOC:MENGO_TT]

====GO:XXXXXX111:negative regulation of lignin catabolic process====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis

is_a: GO:XXXXXX: regulation of  lignin catabolic process

[GOC:MENGO_TT]

====GO:XXXXXX111:lignin oxidation====

namespace: biological process

def: 

is_a:
PMID:18725643

[GOC:MENGO_TT]


====GO:XXXXXX111:lignin depolymerization====

namespace: biological process

def: 

PMID:18725643

is_a: 

[GOC:MENGO_TT]








====GO:XXXXXX106:regulation of lignin biosynthetic process====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of cell wall lignin biosynthesis

regulates : GO:0009809: lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX107:positive regulation of lignin biosynthetic process====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of  cell wall cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX108:negative regulation of lignin biosynthetic process====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis

is_a: GO:XXXXXX: regulation of  lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX11:monolignol biosynthetic process====

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of monolignols

part_of: GO:0009809 lignin biosynthetic process

[GOC:MENGO_TT]


====GO:XXXXXX116:regulation of monolignol biosynthetic process====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of monolignol biosynthesis

regulates: GO:0009809: monolignol biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX117:positive regulation of monolignol biosynthetic process====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol biosynthesis

is_a: regulation of monolignol biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX118:negative regulation of monolignol biosynthetic process====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol biosynthesis

is_a: regulation of monolignol biosynthetic process

====GO:XXXXXX119:p-hydroxyphenyl lignin biosynthetic process====

namespace: biological process

def: The chemical reactions and pathways resulting in the  formation of p-hydroxyphenyl lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

Synonym: H-lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX120:regulation of p-hydroxyphenyl lignin biosynthetic process====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis

regulates: GO:0009809: p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]
 
====GO:XXXXXX121:positive regulation of p-hydroxyphenyl -lignin biosynthetic process====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis

is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX122:negative regulation of p-hydroxyphenyl -lignin biosynthetic process====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of p-hydroxyphenyl lignin biosynthesis

is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX123:guaiacyl lignin biosynthetic process====

namespace: biological process

def: The chemical reactions and pathways resulting in the  formation of guaiacyl lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

synonym: G-lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX124:regulation of guaiacyl lignin biosynthetic process====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of guaiacyl lignin biosynthesis

regulates: GO:0009809: guaiacyl -lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX125:positive regulation of guaiacyl -lignin biosynthetic process====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of Any process that modulates  the frequency, rate or extent of guaiacyl lignin biosynthesis

is_a: regulation of guaiacyl lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX126:negative regulation of guaiacyl -lignin biosynthetic process====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of Any process that modulates  the frequency, rate or extent of guaiacyl lignin biosynthesis 

[GOC:MENGO_TT]

is_a: regulation of guaiacyl -lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX127:syringal  lignin biosynthetic process====

namespace: biological process

def: The chemical reactions and pathways resulting in the  formation of syringal lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

synonym: syringal lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX128:regulation of syringal lignin biosynthetic process====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of syringal lignin biosynthesis 

regulates: GO:0009809: syringal lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX129:positive regulation of syringal lignin biosynthetic process====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthesis

is_a: regulation of syringal lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX130:negative regulation of syringal lignin biosynthetic process====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of syringal lignin biosynthesis

is_a: regulation of syringal lignin biosynthetic process

[GOC:MENGO_TT]

====GO:XXXXXX131:monolignol transport====

namespace: biological process

def: The directed movement of monolignols to lignification sites during xylogenesis (cell wall development)

is_a:GO:0006810 transport 

[GOC:MENGO_TT]

====GO:XXXXXX132:regulation of monolignol transport====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of monolignol transport 

regulates: GO:XXXXXX131:monolignol transport

[GOC:MENGO_TT]

====GO:XXXXXX133:positive regulation of monolignol transport====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol transport

is_a:GO:XXXXXX132:regulation of monolignol transport

[GOC:MENGO_TT]

====GO:XXXXXX134:negative regulation of monolignol transport====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol transport

is_a: GO:XXXXXX132:regulation of monolignol transport

[GOC:MENGO_TT]


====GO:XXXXXX139: monolignol polymerization====

namespace: biological process

def: The process of creating monolignol  polymers, compounds composed of a large number of component monomers

is_a:

[GOC:MENGO_TT]

====GO:XXXXXX140:regulation of  monolignol polymerization====

namespace: biological process

def: Any process that modulates  the frequency, rate or extent of monolignol polymerization 

is_a:

[GOC:MENGO_TT]

====GO:XXXXXX141:negative regulation of monolignol polymerization====

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol polymerization 

====GO:XXXXXX142:positive regulation of monolignol polymerization====

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol polymerization

is_a:

[GOC:MENGO_TT]


===MOLECULAR FUNCTION ONTOLOGY===

====GO:XXXXXX142:glucose oxidase====
namespace: molecular function
def: 
is_a:
PMID:10872509
Comment: In GO as a synonym of GLD-glucose dehydrogenase
[GOC:MENGO_TT]

====GO:XXXXXX142:Lignin Peroxidase-activated glyoxal oxidase====
namespace: molecular function
def: 
is_a:
PMID:10872509
Synonym: LiP-activated glyoxal oxidase
[GOC:MENGO_TT]