MENGO Lignin degradation: Difference between revisions

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==Trudy_5/11/2011==
==Trudy_5/11/2011==
===BIOLOGICAL PROCESS ONTOLOGY===
===BIOLOGICAL PROCESS ONTOLOGY===
====GO:XXXXXX106:regulation of lignin biosynthetic process====
namespace: biological process
def: Any process that modulates  the frequency, rate or extent of cell wall lignin biosynthesis
regulates : GO:0009809: lignin biosynthetic process
[GOC:MENGO_TT]
====GO:XXXXXX107:positive regulation of lignin biosynthetic process====
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of  cell wall cellulose biosynthesis
is_a: GO:XXXXXX: regulation of lignin biosynthetic process
[GOC:MENGO_TT]
====GO:XXXXXX108:negative regulation of lignin biosynthetic process====
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis
is_a: GO:XXXXXX: regulation of  lignin biosynthetic process
[GOC:MENGO_TT]


====GO:XXXXXX109:regulation of lignin catabolic process
====GO:XXXXXX109:regulation of lignin catabolic process
Line 45: Line 18:
[GOC:MENGO_TT]
[GOC:MENGO_TT]


====GO:XXXXXX110:positive regulation of lignin biosynthetic process====
====GO:XXXXXX110:positive regulation of lignin catabolic process====


namespace: biological process
namespace: biological process
Line 55: Line 28:
[GOC:MENGO_TT]
[GOC:MENGO_TT]


====GO:XXXXXX111:negative regulation of lignin biosynthetic process====
====GO:XXXXXX111:negative regulation of lignin catabolic process====


namespace: biological process
namespace: biological process
Line 65: Line 38:
[GOC:MENGO_TT]
[GOC:MENGO_TT]


====GO:XXXXXX112:regulation of lignin catabolic process====
====GO:XXXXXX106:regulation of lignin biosynthetic process====


namespace: biological process
namespace: biological process
Line 71: Line 44:
def: Any process that modulates  the frequency, rate or extent of cell wall lignin biosynthesis
def: Any process that modulates  the frequency, rate or extent of cell wall lignin biosynthesis


regulates : GO:0046274: lignin catabolic process
regulates : GO:0009809: lignin biosynthetic process


[GOC:MENGO_TT]
[GOC:MENGO_TT]


====GO:XXXXXX113:positive regulation of lignin biosynthetic process====
====GO:XXXXXX107:positive regulation of lignin biosynthetic process====


namespace: biological process
namespace: biological process
Line 81: Line 54:
def: Any process that activates or increases the frequency, rate or extent of  cell wall cellulose biosynthesis
def: Any process that activates or increases the frequency, rate or extent of  cell wall cellulose biosynthesis


is_a: GO:XXXXXX: regulation of lignin catabolic process
is_a: GO:XXXXXX: regulation of lignin biosynthetic process


[GOC:MENGO_TT]
[GOC:MENGO_TT]
 
====GO:XXXXXX114:negative regulation of lignin biosynthetic process====
====GO:XXXXXX108:negative regulation of lignin biosynthetic process====


namespace: biological process
namespace: biological process
Line 91: Line 64:
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis


is_a: GO:XXXXXX: regulation of  lignin catabolic process
is_a: GO:XXXXXX: regulation of  lignin biosynthetic process


====GO:XXXXXX115:monolignol biosynthetic process====
[GOC:MENGO_TT]


namespace: biological process
def: The chemical reactions and pathways resulting in the  formation of
monolignol,  source materials for biosynthesis of both lignans and lignin
part_of : GO:0009809: lignin biosynthetic process
[GOC:MENGO_TT]


====GO:XXXXXX116:regulation of monolignol biosynthetic process====
====GO:XXXXXX116:regulation of monolignol biosynthetic process====

Revision as of 23:27, 16 May 2011

Working group

Trudy_5/11/2011

BIOLOGICAL PROCESS ONTOLOGY

====GO:XXXXXX109:regulation of lignin catabolic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis

regulates : GO:0046274: lignin catabolic process

[GOC:MENGO_TT]

GO:XXXXXX110:positive regulation of lignin catabolic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin catabolic process

[GOC:MENGO_TT]

GO:XXXXXX111:negative regulation of lignin catabolic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin catabolic process

[GOC:MENGO_TT]

GO:XXXXXX106:regulation of lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis

regulates : GO:0009809: lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX107:positive regulation of lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX108:negative regulation of lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin biosynthetic process

[GOC:MENGO_TT]


GO:XXXXXX116:regulation of monolignol biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of monolignol biosynthesis

regulates: GO:0009809: lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX117:positive regulation of monolignol biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol biosynthesis

is_a: regulation of monolignol biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX118:negative regulation of monolignol biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol biosynthesis

is_a: regulation of monolignol biosynthetic process

GO:XXXXXX119:p-hydroxyphenyl lignin biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

Synonym: H-lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX120:regulation of p-hydroxyphenyl lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis

regulates: GO:0009809: p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX121:positive regulation of p-hydroxyphenyl -lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis

is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX122:negative regulation of p-hydroxyphenyl -lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of p-hydroxyphenyl lignin biosynthesis

is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX123:guaiacyl lignin biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of guaiacyl lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

synonym: G-lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX124:regulation of guaiacyl lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis

regulates: GO:0009809: guaiacyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX125:positive regulation of guaiacyl -lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis

is_a: regulation of guaiacyl lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX126:negative regulation of guaiacyl -lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis

[GOC:MENGO_TT]

is_a: regulation of guaiacyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX127:syringal lignin biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of syringal lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

synonym: syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX128:regulation of syringal lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of syringal lignin biosynthesis

regulates: GO:0009809: syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX129:positive regulation of syringal lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthesis

is_a: regulation of syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX130:negative regulation of syringal lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of syringal lignin biosynthesis

is_a: regulation of syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX131:monolignol transport

namespace: biological process

def: The directed movement of monolignols to lignification sites during xylogenesis (cell wall development)

is_a:

[GOC:MENGO_TT]

GO:XXXXXX132:regulation of monolignol transport

namespace: biological process

def: Any process that modulates the frequency, rate or extent of monolignol transport

is_a:

[GOC:MENGO_TT]

GO:XXXXXX133:positive regulation of monolignol transport

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol transport

is_a:

[GOC:MENGO_TT]

GO:XXXXXX134:negative regulation of monolignol transport

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol transport

is_a:

[GOC:MENGO_TT]

GO:XXXXXX135:monolignol radical formation

namespace: biological process

def: The chemical reactions resulting in the formation of monolignol radical

is_a:

[GOC:MENGO_TT]

GO:XXXXXX136:regulation of monolignol radical formation

namespace: biological process

def: Any process that modulates the frequency, rate or extent of mannan monolignol radical formation

is_a:

[GOC:MENGO_TT]

GO:XXXXXX137:positive regulation of monolignol radical formation

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol radical formation

is_a:

[GOC:MENGO_TT]

GO:XXXXXX138:negative regulation of monolignol radical formation

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol radical formation

is_a:

[GOC:MENGO_TT]

GO:XXXXXX139: monolignol polymerization

namespace: biological process

def: The process of creating monolignol polymers, compounds composed of a large number of component monomers

is_a:

[GOC:MENGO_TT]

GO:XXXXXX140:regulation of monolignol polymerization

namespace: biological process

def: Any process that modulates the frequency, rate or extent of monolignol polymerization

is_a:

[GOC:MENGO_TT]

GO:XXXXXX141:negative regulation of monolignol polymerization

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol polymerization

GO:XXXXXX142:positive regulation of monolignol polymerization

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol polymerization

is_a:

[GOC:MENGO_TT]

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