MENGO Lignin degradation: Difference between revisions
No edit summary |
|||
(12 intermediate revisions by one other user not shown) | |||
Line 1: | Line 1: | ||
[[Category:Content_MENGO]] | |||
Working group | Working group | ||
* | |||
* | |||
* | |||
* | * | ||
Line 5: | Line 9: | ||
===BIOLOGICAL PROCESS ONTOLOGY=== | ===BIOLOGICAL PROCESS ONTOLOGY=== | ||
====GO: | |||
====GO:0046274: lignin catabolic process==== | |||
namespace: biological process | |||
def: Already in GO | |||
Add Synonym:Ligninolysis | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX109:regulation of lignin catabolic process | |||
namespace: biological process | namespace: biological process | ||
Line 11: | Line 26: | ||
def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis | def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis | ||
regulates : GO: | regulates : GO:0046274: lignin catabolic process | ||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX110:positive regulation of lignin catabolic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis | def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis | ||
is_a: GO:XXXXXX: regulation of lignin catabolic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX111:negative regulation of lignin catabolic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis | def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis | ||
is_a: GO:XXXXXX: regulation of lignin catabolic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX111:lignin oxidation==== | |||
namespace: biological process | |||
def: | |||
is_a: | |||
PMID:18725643 | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX111:lignin depolymerization==== | |||
namespace: biological process | namespace: biological process | ||
def: | |||
def: | |||
PMID:18725643 | |||
is_a: | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX106:regulation of lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis | def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis | ||
regulates : GO:0009809: lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX107:positive regulation of lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis | def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis | ||
is_a: GO:XXXXXX: regulation of lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX108:negative regulation of lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis | def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis | ||
is_a: GO:XXXXXX: regulation of lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX11:monolignol biosynthetic process==== | |||
namespace: biological process | |||
def: The chemical reactions and pathways resulting in the formation of monolignols | |||
part_of: GO:0009809 lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX116:regulation of monolignol biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of monolignol biosynthesis | def: Any process that modulates the frequency, rate or extent of monolignol biosynthesis | ||
regulates: GO:0009809: monolignol biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX117:positive regulation of monolignol biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of monolignol biosynthesis | def: Any process that activates or increases the frequency, rate or extent of monolignol biosynthesis | ||
is_a: regulation of monolignol biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX118:negative regulation of monolignol biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of monolignol biosynthesis | def: Any process that stops, prevents or reduces the rate or extent of monolignol biosynthesis | ||
is_a: regulation of monolignol biosynthetic process | is_a: regulation of monolignol biosynthetic process | ||
====GO:XXXXXX119:p-hydroxyphenyl lignin biosynthetic process==== | |||
namespace: biological process | |||
def: The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin, | def: The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin, | ||
part of : GO:XXXXXXXXX: monolignol biosynthetic process | part of : GO:XXXXXXXXX: monolignol biosynthetic process | ||
Synonym: H-lignin biosynthetic process | Synonym: H-lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX120:regulation of p-hydroxyphenyl lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis | def: Any process that modulates the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis | ||
regulates: GO:0009809: p-hydroxyphenyl -lignin biosynthetic process | regulates: GO:0009809: p-hydroxyphenyl -lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX121:positive regulation of p-hydroxyphenyl -lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis | def: Any process that activates or increases the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis | ||
is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX122:negative regulation of p-hydroxyphenyl -lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of p-hydroxyphenyl lignin biosynthesis | def: Any process that stops, prevents or reduces the rate or extent of p-hydroxyphenyl lignin biosynthesis | ||
is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process | is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX123:guaiacyl lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: The chemical reactions and pathways resulting in the formation of guaiacyl lignin, | def: The chemical reactions and pathways resulting in the formation of guaiacyl lignin, | ||
part of : GO:XXXXXXXXX: monolignol biosynthetic process | part of : GO:XXXXXXXXX: monolignol biosynthetic process | ||
synonym: G-lignin biosynthetic process | synonym: G-lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX124:regulation of guaiacyl lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis | def: Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis | ||
regulates: GO:0009809: guaiacyl -lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX125:positive regulation of guaiacyl -lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis | def: Any process that activates or increases the frequency, rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis | ||
is_a: regulation of guaiacyl lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX126:negative regulation of guaiacyl -lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis [GOC:MENGO_TT] | |||
def: Any process that stops, prevents or reduces the rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis | |||
[GOC:MENGO_TT] | |||
is_a: regulation of guaiacyl -lignin biosynthetic process | is_a: regulation of guaiacyl -lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX127:syringal lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: The chemical reactions and pathways resulting in the formation of syringal lignin, | def: The chemical reactions and pathways resulting in the formation of syringal lignin, | ||
part of : GO:XXXXXXXXX: monolignol biosynthetic process | part of : GO:XXXXXXXXX: monolignol biosynthetic process | ||
synonym: syringal lignin biosynthetic process | synonym: syringal lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX128:regulation of syringal lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of syringal lignin biosynthesis | |||
def: Any process that modulates the frequency, rate or extent of syringal lignin biosynthesis | |||
regulates: GO:0009809: syringal lignin biosynthetic process | regulates: GO:0009809: syringal lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX129:positive regulation of syringal lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthesis | def: Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthesis | ||
is_a: regulation of syringal lignin biosynthetic process | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX130:negative regulation of syringal lignin biosynthetic process==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of syringal lignin biosynthesis | def: Any process that stops, prevents or reduces the rate or extent of syringal lignin biosynthesis | ||
is_a: regulation of syringal lignin biosynthetic process | is_a: regulation of syringal lignin biosynthetic process | ||
[GOC:MENGO_TT] | |||
====GO:XXXXXX131:monolignol transport==== | |||
namespace: biological process | namespace: biological process | ||
def: The directed movement of monolignols to lignification sites during xylogenesis (cell wall development) | def: The directed movement of monolignols to lignification sites during xylogenesis (cell wall development) | ||
is_a:GO:0006810 transport | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX132:regulation of monolignol transport==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of monolignol transport | |||
regulates: GO:XXXXXX131:monolignol transport | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX133:positive regulation of monolignol transport==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of monolignol transport | def: Any process that activates or increases the frequency, rate or extent of monolignol transport | ||
is_a:GO:XXXXXX132:regulation of monolignol transport | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX134:negative regulation of monolignol transport==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of monolignol transport | def: Any process that stops, prevents or reduces the rate or extent of monolignol transport | ||
is_a: GO:XXXXXX132:regulation of monolignol transport | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX139: monolignol polymerization==== | |||
namespace: biological process | namespace: biological process | ||
def: The | |||
def: The process of creating monolignol polymers, compounds composed of a large number of component monomers | |||
is_a: | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX140:regulation of monolignol polymerization==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that modulates the frequency, rate or extent of | |||
def: Any process that modulates the frequency, rate or extent of monolignol polymerization | |||
is_a: | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
====GO:XXXXXX141:negative regulation of monolignol polymerization==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that stops, prevents or reduces the rate or extent of monolignol polymerization | |||
====GO:XXXXXX142:positive regulation of monolignol polymerization==== | |||
namespace: biological process | namespace: biological process | ||
def: Any process that activates or increases the frequency, rate or extent of monolignol polymerization | |||
is_a: | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] | ||
===MOLECULAR FUNCTION ONTOLOGY=== | |||
====GO:XXXXXX142:Lignin Peroxidase-activated glyoxal oxidase==== | |||
namespace: molecular function | |||
def: | |||
namespace: | is_a: | ||
def: | PMID:10872509 | ||
Synonym: LiP-activated glyoxal oxidase | |||
[GOC:MENGO_TT] | [GOC:MENGO_TT] |
Latest revision as of 18:59, 27 May 2014
Working group
Trudy_5/11/2011
BIOLOGICAL PROCESS ONTOLOGY
GO:0046274: lignin catabolic process
namespace: biological process
def: Already in GO
Add Synonym:Ligninolysis
[GOC:MENGO_TT]
====GO:XXXXXX109:regulation of lignin catabolic process
namespace: biological process
def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis
regulates : GO:0046274: lignin catabolic process
[GOC:MENGO_TT]
GO:XXXXXX110:positive regulation of lignin catabolic process
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis
is_a: GO:XXXXXX: regulation of lignin catabolic process
[GOC:MENGO_TT]
GO:XXXXXX111:negative regulation of lignin catabolic process
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis
is_a: GO:XXXXXX: regulation of lignin catabolic process
[GOC:MENGO_TT]
GO:XXXXXX111:lignin oxidation
namespace: biological process
def:
is_a: PMID:18725643
[GOC:MENGO_TT]
GO:XXXXXX111:lignin depolymerization
namespace: biological process
def:
PMID:18725643
is_a:
[GOC:MENGO_TT]
GO:XXXXXX106:regulation of lignin biosynthetic process
namespace: biological process
def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis
regulates : GO:0009809: lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX107:positive regulation of lignin biosynthetic process
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis
is_a: GO:XXXXXX: regulation of lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX108:negative regulation of lignin biosynthetic process
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis
is_a: GO:XXXXXX: regulation of lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX11:monolignol biosynthetic process
namespace: biological process
def: The chemical reactions and pathways resulting in the formation of monolignols
part_of: GO:0009809 lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX116:regulation of monolignol biosynthetic process
namespace: biological process
def: Any process that modulates the frequency, rate or extent of monolignol biosynthesis
regulates: GO:0009809: monolignol biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX117:positive regulation of monolignol biosynthetic process
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of monolignol biosynthesis
is_a: regulation of monolignol biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX118:negative regulation of monolignol biosynthetic process
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of monolignol biosynthesis
is_a: regulation of monolignol biosynthetic process
GO:XXXXXX119:p-hydroxyphenyl lignin biosynthetic process
namespace: biological process
def: The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin,
part of : GO:XXXXXXXXX: monolignol biosynthetic process
Synonym: H-lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX120:regulation of p-hydroxyphenyl lignin biosynthetic process
namespace: biological process
def: Any process that modulates the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis
regulates: GO:0009809: p-hydroxyphenyl -lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX121:positive regulation of p-hydroxyphenyl -lignin biosynthetic process
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis
is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX122:negative regulation of p-hydroxyphenyl -lignin biosynthetic process
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of p-hydroxyphenyl lignin biosynthesis
is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX123:guaiacyl lignin biosynthetic process
namespace: biological process
def: The chemical reactions and pathways resulting in the formation of guaiacyl lignin,
part of : GO:XXXXXXXXX: monolignol biosynthetic process
synonym: G-lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX124:regulation of guaiacyl lignin biosynthetic process
namespace: biological process
def: Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis
regulates: GO:0009809: guaiacyl -lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX125:positive regulation of guaiacyl -lignin biosynthetic process
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis
is_a: regulation of guaiacyl lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX126:negative regulation of guaiacyl -lignin biosynthetic process
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis
[GOC:MENGO_TT]
is_a: regulation of guaiacyl -lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX127:syringal lignin biosynthetic process
namespace: biological process
def: The chemical reactions and pathways resulting in the formation of syringal lignin,
part of : GO:XXXXXXXXX: monolignol biosynthetic process
synonym: syringal lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX128:regulation of syringal lignin biosynthetic process
namespace: biological process
def: Any process that modulates the frequency, rate or extent of syringal lignin biosynthesis
regulates: GO:0009809: syringal lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX129:positive regulation of syringal lignin biosynthetic process
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthesis
is_a: regulation of syringal lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX130:negative regulation of syringal lignin biosynthetic process
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of syringal lignin biosynthesis
is_a: regulation of syringal lignin biosynthetic process
[GOC:MENGO_TT]
GO:XXXXXX131:monolignol transport
namespace: biological process
def: The directed movement of monolignols to lignification sites during xylogenesis (cell wall development)
is_a:GO:0006810 transport
[GOC:MENGO_TT]
GO:XXXXXX132:regulation of monolignol transport
namespace: biological process
def: Any process that modulates the frequency, rate or extent of monolignol transport
regulates: GO:XXXXXX131:monolignol transport
[GOC:MENGO_TT]
GO:XXXXXX133:positive regulation of monolignol transport
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of monolignol transport
is_a:GO:XXXXXX132:regulation of monolignol transport
[GOC:MENGO_TT]
GO:XXXXXX134:negative regulation of monolignol transport
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of monolignol transport
is_a: GO:XXXXXX132:regulation of monolignol transport
[GOC:MENGO_TT]
GO:XXXXXX139: monolignol polymerization
namespace: biological process
def: The process of creating monolignol polymers, compounds composed of a large number of component monomers
is_a:
[GOC:MENGO_TT]
GO:XXXXXX140:regulation of monolignol polymerization
namespace: biological process
def: Any process that modulates the frequency, rate or extent of monolignol polymerization
is_a:
[GOC:MENGO_TT]
GO:XXXXXX141:negative regulation of monolignol polymerization
namespace: biological process
def: Any process that stops, prevents or reduces the rate or extent of monolignol polymerization
GO:XXXXXX142:positive regulation of monolignol polymerization
namespace: biological process
def: Any process that activates or increases the frequency, rate or extent of monolignol polymerization
is_a:
[GOC:MENGO_TT]
MOLECULAR FUNCTION ONTOLOGY
GO:XXXXXX142:Lignin Peroxidase-activated glyoxal oxidase
namespace: molecular function def: is_a: PMID:10872509 Synonym: LiP-activated glyoxal oxidase [GOC:MENGO_TT]