Difference between revisions of "MENGO Lignin degradation"

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[GOC:MENGO_TT]
 
[GOC:MENGO_TT]
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====GO:XXXXXX111:lignin oxidation====
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namespace: biological process
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def:
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is_a:
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PMID:18725643
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[GOC:MENGO_TT]
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====GO:XXXXXX111:lignin depolymerization====
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namespace: biological process
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def:
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PMID:18725643
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is_a:
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[GOC:MENGO_TT]
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====GO:XXXXXX106:regulation of lignin biosynthetic process====
 
====GO:XXXXXX106:regulation of lignin biosynthetic process====

Revision as of 01:47, 5 July 2011

Working group

Contents

Trudy_5/11/2011

BIOLOGICAL PROCESS ONTOLOGY

GO:0046274: lignin catabolic process

namespace: biological process

def: Already in GO

Add Synonym:Ligninolysis

[GOC:MENGO_TT]

====GO:XXXXXX109:regulation of lignin catabolic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis

regulates : GO:0046274: lignin catabolic process

[GOC:MENGO_TT]

GO:XXXXXX110:positive regulation of lignin catabolic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin catabolic process

[GOC:MENGO_TT]

GO:XXXXXX111:negative regulation of lignin catabolic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin catabolic process

[GOC:MENGO_TT]

GO:XXXXXX111:lignin oxidation

namespace: biological process

def:

is_a: PMID:18725643

[GOC:MENGO_TT]


GO:XXXXXX111:lignin depolymerization

namespace: biological process

def:

PMID:18725643

is_a:

[GOC:MENGO_TT]





GO:XXXXXX106:regulation of lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of cell wall lignin biosynthesis

regulates : GO:0009809: lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX107:positive regulation of lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX108:negative regulation of lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of cellulose biosynthesis

is_a: GO:XXXXXX: regulation of lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX11:monolignol biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of monolignols

part_of: GO:0009809 lignin biosynthetic process

[GOC:MENGO_TT]


GO:XXXXXX116:regulation of monolignol biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of monolignol biosynthesis

regulates: GO:0009809: monolignol biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX117:positive regulation of monolignol biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol biosynthesis

is_a: regulation of monolignol biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX118:negative regulation of monolignol biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol biosynthesis

is_a: regulation of monolignol biosynthetic process

GO:XXXXXX119:p-hydroxyphenyl lignin biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of p-hydroxyphenyl lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

Synonym: H-lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX120:regulation of p-hydroxyphenyl lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis

regulates: GO:0009809: p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX121:positive regulation of p-hydroxyphenyl -lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of p-hydroxyphenyl lignin biosynthesis

is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX122:negative regulation of p-hydroxyphenyl -lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of p-hydroxyphenyl lignin biosynthesis

is_a: regulation of p-hydroxyphenyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX123:guaiacyl lignin biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of guaiacyl lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

synonym: G-lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX124:regulation of guaiacyl lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis

regulates: GO:0009809: guaiacyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX125:positive regulation of guaiacyl -lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis

is_a: regulation of guaiacyl lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX126:negative regulation of guaiacyl -lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of Any process that modulates the frequency, rate or extent of guaiacyl lignin biosynthesis

[GOC:MENGO_TT]

is_a: regulation of guaiacyl -lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX127:syringal lignin biosynthetic process

namespace: biological process

def: The chemical reactions and pathways resulting in the formation of syringal lignin,

part of : GO:XXXXXXXXX: monolignol biosynthetic process

synonym: syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX128:regulation of syringal lignin biosynthetic process

namespace: biological process

def: Any process that modulates the frequency, rate or extent of syringal lignin biosynthesis

regulates: GO:0009809: syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX129:positive regulation of syringal lignin biosynthetic process

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of syringal lignin biosynthesis

is_a: regulation of syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX130:negative regulation of syringal lignin biosynthetic process

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of syringal lignin biosynthesis

is_a: regulation of syringal lignin biosynthetic process

[GOC:MENGO_TT]

GO:XXXXXX131:monolignol transport

namespace: biological process

def: The directed movement of monolignols to lignification sites during xylogenesis (cell wall development)

is_a:GO:0006810 transport

[GOC:MENGO_TT]

GO:XXXXXX132:regulation of monolignol transport

namespace: biological process

def: Any process that modulates the frequency, rate or extent of monolignol transport

regulates: GO:XXXXXX131:monolignol transport

[GOC:MENGO_TT]

GO:XXXXXX133:positive regulation of monolignol transport

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol transport

is_a:GO:XXXXXX132:regulation of monolignol transport

[GOC:MENGO_TT]

GO:XXXXXX134:negative regulation of monolignol transport

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol transport

is_a: GO:XXXXXX132:regulation of monolignol transport

[GOC:MENGO_TT]


GO:XXXXXX139: monolignol polymerization

namespace: biological process

def: The process of creating monolignol polymers, compounds composed of a large number of component monomers

is_a:

[GOC:MENGO_TT]

GO:XXXXXX140:regulation of monolignol polymerization

namespace: biological process

def: Any process that modulates the frequency, rate or extent of monolignol polymerization

is_a:

[GOC:MENGO_TT]

GO:XXXXXX141:negative regulation of monolignol polymerization

namespace: biological process

def: Any process that stops, prevents or reduces the rate or extent of monolignol polymerization

GO:XXXXXX142:positive regulation of monolignol polymerization

namespace: biological process

def: Any process that activates or increases the frequency, rate or extent of monolignol polymerization

is_a:

[GOC:MENGO_TT]


MOLECULAR FUNCTION ONTOLOGY

GO:XXXXXX142:glucose oxidase

namespace: molecular function def: is_a: PMID:10872509 Comment: In GO as a synonym of GLD-glucose dehydrogenase [GOC:MENGO_TT]

GO:XXXXXX142:Lignin Peroxidase-activated glyoxal oxidase

namespace: molecular function def: is_a: PMID:10872509 Synonym: LiP-activated glyoxal oxidase [GOC:MENGO_TT]