MENGO Microbial Energy Processes Term Development

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The MENGO project is a multi-institutional collaborative effort that aims to develop new Gene Ontology terms to describe microbial bioenergy related processes. It is funded by the DOE as part of its Systems Biology Knowledgebase program.

Trudy

[Term] id: GO:XXXXXX14 name: Hemicellulase activity namespace: molecular_function def: catalysis of the breakdown of hemicellulose, a plant cell wall polysaccharidesthat have a backbone of 1,4-linked beta-D-pyranosyl residues in which O4 is in the equatorial orientation [GOC:MENGO_TT] is_a : GO:0016787: hydrolase activity

[Term] id: GO:XXXXXX15 name: exo-1,4-β-d- xylanases activity namespace: molecular_function def: catalysis of the hydrolysis of (1→4)-β-D-xylans, to remove successive D-xylose residues from the non-reducing termini [GOC:MENGO_TT] is_a :GO:004553 hydrolase activity, hydrolyzing O-glycosyl compounds


[Term] id: GO:XXXXXX16 name: 1,4-β-d- mannosidase activity namespace: molecular_function def: catalysis of the hydrolysis of 1,4-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans [GOC:MENGO_TT] is_a :GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds




[Term] id: GO:XXXXXX17 name: regulation of mannan catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of mannan catabolism [GOC:MENGO_TT] regulates : GO:0046355 : mannan catabolic process

[Term] id: GO:XXXXXX18 name: positive regulation of mannan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of mannan catabolism [GOC:MENGO_TT] is_a : regulation of mannan catabolic process

[Term] id: GO:XXXXXX19 name: negative regulation of mannan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of mannan catabolism [GOC:MENGO_TT] is_a : regulation of mannan catabolic process


[Term] id: GO:XXXXXX20 name: regulation of galactomannan catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of mannan catabolism [GOC:MENGO_TT] regulates : GO:0051682 : galactomannan catabolic process

[Term] id: GO:XXXXXX21 name: positive regulation of galactomannan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of galactomannan catabolism [GOC:MENGO_TT] is_a : regulation of galactomannan catabolic process

[Term] id: GO:XXXXXX22 name: negative regulation of galactomannan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of galactomannan catabolism [GOC:MENGO_TT] is_a : regulation of galactomannan catabolic process

[Term] id: GO:XXXXXX23 name: glucomannan catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of glucomannan, a polysaccharide composed of D-glucose and D-mannose [GOC:MENGO_TT] is_a : GO:0010391 : glucomannan metabolic process

[Term] id: GO:XXXXXX24 name: regulation of glucomannan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of glucomannan catabolism [GOC:MENGO_TT] regulates : glucomannan catabolic process

[Term] id: GO:XXXXXX25 name: positive regulation of glucomannan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of glucomannan catabolism [GOC:MENGO_TT] is_a : regulation of glucomannan catabolic process


[Term] id: GO:XXXXXX26 name: negative regulation of glucomannan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of glucomannan catabolism [GOC:MENGO_TT] is_a : regulation of glucomannan catabolic process


[Term] id: GO:XXXXXX27 name: galactoglucomannan catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of galactoglucomannan, a polysaccharide composed of D-glucose, D-galactose and D-mannose. [GOC:MENGO_TT] is_a : GO:0010392 galactoglucomannan metabolic process

[Term] id: GO:XXXXXX28 name: regulation of galactoglucomannan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of galactoglucomannan catabolism [GOC:MENGO_TT] regulates: galactoglucomannan catabolic process

[Term] id: GO:XXXXXX29 name: positive regulation of galactoglucomannan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of galactoglucomannan catabolism [GOC:MENGO_TT] is_a : regulation of galactoglucomannan catabolic process


[Term] id: GO:XXXXXX30 name: negative regulation of galactoglucomannan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of galactoglucomannan catabolism [GOC:MENGO_TT] is_a : regulation of galactoglucomannan catabolic process



[Term] id: GO:XXXXXX31 name: arabinoxylan catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone decorated with arabinose side units [GOC:MENGO_TT] is_a : GO:0010416 : arabinoxylan metabolic process

[Term] id: GO:XXXXXX32 name: regulation of arabinoxylan catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of arabinoxylan catabolism [GOC:MENGO_TT] regulates: arabinoxylan catabolic process

[Term] id: GO:XXXXXX33 name: positive regulation of arabinoxylan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of arabinoxylan catabolism [GOC:MENGO_TT] is_a : regulation of arabinoxylan catabolic process


[Term] id: GO:XXXXXX34 name: negative regulation of arabinoxylan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of arabinoxylan catabolism [GOC:MENGO_TT] is_a : regulation of arabinoxylan catabolic process


[Term] id: GO:XXXXXX35 name: glucuronoxylan catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units. [GOC:MENGO_TT] is_a : GO:0010413 glucuronoxylan metabolic process

[Term] id: GO:XXXXXX36 name: regulation of glucuronoxylan catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of glucoronoxylan catabolism [GOC:MENGO_TT] regulates : glucuronoxylan catabolic process


[Term] id: GO:XXXXXX37 name: positive regulation of glucoronoxylan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of glucoronoxylan catabolism [GOC:MENGO_TT] is_a : regulation of glucuronoxylan catabolic process


[Term] id: GO:XXXXXX38 name: negative regulation of glucuronoxylan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of glucoronoxylan catabolism [GOC:MENGO_TT] is_a : regulation of glucuronoxylan catabolic process


[Term] id: GO:XXXXXX39 name: glucuronoarabinoxylan catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid and arabinose side units. [GOC:MENGO_TT] is_a : GO:0010414 glucuronoarabinoxylan metabolic process

[Term] id: GO:XXXXXX40 name: regulation of glucoronoarabinoxylan catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of glucoronoarabinoxylan catabolism [GOC:MENGO_TT] regulates: glucuronoarabinoxylan catabolic process

[Term] id: GO:XXXXXX41 name: positive regulation of glucoronoarabinoxylan catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of glucoronoarabinoxylan catabolism [GOC:MENGO_TT] is_a : regulation of glucuronoxylan catabolic process


[Term] id: GO:XXXXXX42 name: negative regulation of glucoronoarabinoxylan catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of glucoronoarabinoxylan catabolism [GOC:MENGO_TT] is_a : regulation of glucuronoxylan catabolic process


[Term] id: GO:XXXXXX43 name: cell wall polysaccharide catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of cell wall polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages [GOC:MENGO_TT] is_a: GO:0010383 : cell wall polysaccharide metabolic

[Term] id: GO:XXXXXX44 name: regulation of cell wall polysaccharide catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of cell wall polysaccharide catabolism [GOC:MENGO_TT] regulates: cell wall polysaccharide catabolic process

[Term] id: GO:XXXXXX45 name: positive regulation of cell wall polysaccharide catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of cell wall polysaccharide catabolism 

[GOC:MENGO_TT]

is_a: regulation of cell wall polysaccharide catabolic process

[Term] id: GO:XXXXXX46 name: negative regulation of cell wall polysaccharide catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of cell wall polysaccharide catabolism [GOC:MENGO_TT] is_a: regulation of cell wall polysaccharide catabolic process


[Term] id: GO:XXXXXX47 name: cell wall cellulose catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation in the cell wall. [GOC:MENGO_TT] is a: cell wall metabolic process (currently this term is made synonym of plant-type cell wall metabolic, but should be a term on its own coz cell wall of for example oomycete and algae also has cell wall

[Term] id: GO:XXXXXX48 name: regulation of cell wall cellulose catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of cell wall cellulose catabolism [GOC:MENGO_TT] regulates: cell wall cellulose catabolic process

[Term] id: GO:XXXXXX49 name: positive regulation cell wall cellulose catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose catabolism [GOC:MENGO_TT] is a: regulation of cell wall cellulose catabolic process

[Term] id: GO:XXXXXX50 name: negative regulation cell wall cellulose catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of cell wall cellulose catabolism [GOC:MENGO_TT] is_a: regulation of cell wall cellulose catabolic process




[Term] id: GO:XXXXXX47 name: cell wall cellulose catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation in the cell wall. [GOC:MENGO_TT] is a: cell wall metabolic process (currently this term is made synonym of plant-type cell wall metabolic, but should be a term on its own coz cell wall of for example oomycete and algae also has cell wall

[Term] id: GO:XXXXXX48 name: regulation of cell wall cellulose catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of cell wall cellulose catabolism [GOC:MENGO_TT] regulates: cell wall cellulose catabolic process

[Term] id: GO:XXXXXX49 name: positive regulation cell wall cellulose catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of cell wall cellulose catabolism [GOC:MENGO_TT] is a: regulation of cell wall cellulose catabolic process

[Term] id: GO:XXXXXX50 name: negative regulation cell wall cellulose catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of cell wall cellulose catabolism [GOC:MENGO_TT] is_a: regulation of cell wall cellulose catabolic process

[Term] id: GO:XXXXXX51 name: plant-type cell wall cellulose catabolic process namespace: biological process def: The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation in the plant cell wall. [GOC:MENGO_TT] is a: GO:0052541 : plant-type cell wall cellulose metabolic process (see previous note)

[Term] id: GO:XXXXXX52 name: regulation of plant-type cell wall cellulose catabolic process namespace: biological process def: Any process that modulates the frequency, rate or extent of plant-type cell wall cellulose catabolism [GOC:MENGO_TT] regulates: plant-type cell wall cellulose catabolic process

[Term] id: GO:XXXXXX53 name: positive regulation of plant-type cell wall cellulose catabolic process namespace: biological process def: Any process that activates or increases the frequency, rate or extent of plant-type cell wall cellulose catabolism [GOC:MENGO_TT] is a: regulation of plant-type cell wall cellulose catabolic process

[Term] id: GO:XXXXXX54 name: negative regulation of plant-type cell wall cellulose catabolic process namespace: biological process def: Any process that stops, prevents or reduces the rate or extent of plant-type cell wall cellulose catabolism [GOC:MENGO_TT] is_a: regulation of plant-type cell wall cellulose catabolic process

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