MGI December 2013: Difference between revisions

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= Annotation Progress =
= Annotation Progress =


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{| class="wikitable"
{| class="wikitable" |cellpadding="2"
|-
|-
! Annotation Type !! Dec 5 2012  !! Dec 5 2013 !! Change !!% change
! Annotation Type !! Dec 5 2012  !! Dec 5 2013 !! Change !!% change
|-
|-
|Total Genes annotated with at least one GO term of any kind || 25452  || TBA || TBA || TBA
|Total Genes annotated with at least one GO term of any kind || 25452  ||25406 || TBA || TBA
|-
|-
| Total annotations: || 286957 || TBA || TBA || TBA
| Total annotations: || 286957 || 303195 || TBA || TBA
|-
|-
|Total non-IEA Annotation  
|||Total non-IEA Annotation  
|-
|-
|  Total Number of Genes: || 24550 || TBA || TBA || TBA  
|  Total Number of Genes: || 24550 || 24597 || TBA || TBA  
|-
|-
|Total Annotations: ||193088 || || || ||
|Total Annotations: ||193088 ||208808 || || ||
|-
|||Annotation by Direct Experiment
|-
|MGI Curated Genes ||11104 ||11558 || || ||
|-
|MGI Curated Anntations ||70615 ||75497 || || ||
|-
|GOA Curated Genes: ||3475 ||4067 || || ||
|-
|GOA Curated Annotations: ||18055 ||21976 || || ||
|-
|||Annotation by Orthology
|-
|Total Genes Annotated by Orthology ||9451
||9826 || || ||
|-
|Total Orthology Annotation ||68621
||74777 || || ||
|-
|Genes Annotated by Human Orthology Load (GOA) ||7756 ||8177 || || ||
|-
|Total Annotation by Human Orthology Load ||42237 ||46001 || || ||
|-
|Genes annotated by Rat Orthology Load (RGD) ||4083 ||4160 || || ||
|-
|Total Annotations by Rat Orthology Load || 23323||24575 || || ||
|-
|||IEA Annotation
|-
|Total Genes with IEA  ||16372 || || || ||
|-
|Total IEA annotations ||93869 || || || ||
|-
|Total Genes with SwissProt to GO ||15971
|| || || ||
|-
|Total SwissProt to GO Annotations ||64733 || || || ||
|-
|Total Genes with Interpro to GO ||9792
|| || || ||
|-
|Total Interpro to GO Annotations ||27804
|| || || ||
|-
|Total Genes with EC to GO Annotations ||944 || || || ||
|-
|Total EC to GO annotations ||1332 || || || ||
 
|}
|}



Revision as of 15:58, 26 November 2013

Overview:

Staff:

[please include FTEs working on GOC tasks designating as well how many FTEs funding by GOC NIHGRI grant]

Judith Blake*

Karen R Christie*

Mary E Dolan*

Harold J Drabkin*

David Hill*

Li Ni

Dmitry Sitnikov

* Funded entirely or partially by GO

Annotation Progress

Annotation Type Dec 5 2012 Dec 5 2013 Change % change
Total Genes annotated with at least one GO term of any kind 25452 25406 TBA TBA
Total annotations: 286957 303195 TBA TBA
Total non-IEA Annotation
Total Number of Genes: 24550 24597 TBA TBA
Total Annotations: 193088 208808
Annotation by Direct Experiment
MGI Curated Genes 11104 11558
MGI Curated Anntations 70615 75497
GOA Curated Genes: 3475 4067
GOA Curated Annotations: 18055 21976
Annotation by Orthology
Total Genes Annotated by Orthology 9451 9826
Total Orthology Annotation 68621 74777
Genes Annotated by Human Orthology Load (GOA) 7756 8177
Total Annotation by Human Orthology Load 42237 46001
Genes annotated by Rat Orthology Load (RGD) 4083 4160
Total Annotations by Rat Orthology Load 23323 24575
IEA Annotation
Total Genes with IEA 16372
Total IEA annotations 93869
Total Genes with SwissProt to GO 15971
Total SwissProt to GO Annotations 64733
Total Genes with Interpro to GO 9792
Total Interpro to GO Annotations 27804
Total Genes with EC to GO Annotations 944
Total EC to GO annotations 1332

Methods and strategies for annotation

(please note % effort on literature curation vs. computational annotation methods)

a. Literature curation:

b. Computational annotation strategies:

c. Priorities for annotation

Presentations and Publications

a. Papers with substantial GO content

b. Presentations including Talks and Tutorials and Teaching

c. Poster presentations

Other Highlights:

A. Ontology Development Contributions:


B. Annotation Outreach and User Advocacy Efforts:


C. Other Highlights: