MGI December 2013: Difference between revisions
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= Annotation Progress = | = Annotation Progress = | ||
{| class="wikitable" | {| class="wikitable" |cellpadding="2" | ||
|- | |- | ||
! Annotation Type !! Dec 5 2012 !! Dec 5 2013 !! Change !!% change | ! Annotation Type !! Dec 5 2012 !! Dec 5 2013 !! Change !!% change | ||
|- | |- | ||
|Total Genes annotated with at least one GO term of any kind || 25452 || | |Total Genes annotated with at least one GO term of any kind || 25452 ||25406 || TBA || TBA | ||
|- | |- | ||
| Total annotations: || 286957 || | | Total annotations: || 286957 || 303195 || TBA || TBA | ||
|- | |- | ||
|Total non-IEA Annotation | |||Total non-IEA Annotation | ||
|- | |- | ||
| Total Number of Genes: || 24550 || | | Total Number of Genes: || 24550 || 24597 || TBA || TBA | ||
|- | |- | ||
|Total Annotations: ||193088 || || || || | |Total Annotations: ||193088 ||208808 || || || | ||
|- | |||
|||Annotation by Direct Experiment | |||
|- | |||
|MGI Curated Genes ||11104 ||11558 || || || | |||
|- | |||
|MGI Curated Anntations ||70615 ||75497 || || || | |||
|- | |||
|GOA Curated Genes: ||3475 ||4067 || || || | |||
|- | |||
|GOA Curated Annotations: ||18055 ||21976 || || || | |||
|- | |||
|||Annotation by Orthology | |||
|- | |||
|Total Genes Annotated by Orthology ||9451 | |||
||9826 || || || | |||
|- | |||
|Total Orthology Annotation ||68621 | |||
||74777 || || || | |||
|- | |||
|Genes Annotated by Human Orthology Load (GOA) ||7756 ||8177 || || || | |||
|- | |||
|Total Annotation by Human Orthology Load ||42237 ||46001 || || || | |||
|- | |||
|Genes annotated by Rat Orthology Load (RGD) ||4083 ||4160 || || || | |||
|- | |||
|Total Annotations by Rat Orthology Load || 23323||24575 || || || | |||
|- | |||
|||IEA Annotation | |||
|- | |||
|Total Genes with IEA ||16372 || || || || | |||
|- | |||
|Total IEA annotations ||93869 || || || || | |||
|- | |||
|Total Genes with SwissProt to GO ||15971 | |||
|| || || || | |||
|- | |||
|Total SwissProt to GO Annotations ||64733 || || || || | |||
|- | |||
|Total Genes with Interpro to GO ||9792 | |||
|| || || || | |||
|- | |||
|Total Interpro to GO Annotations ||27804 | |||
|| || || || | |||
|- | |||
|Total Genes with EC to GO Annotations ||944 || || || || | |||
|- | |||
|Total EC to GO annotations ||1332 || || || || | |||
|} | |} | ||
Revision as of 15:58, 26 November 2013
Overview:
Staff:
[please include FTEs working on GOC tasks designating as well how many FTEs funding by GOC NIHGRI grant]
Judith Blake*
Karen R Christie*
Mary E Dolan*
Harold J Drabkin*
David Hill*
Li Ni
Dmitry Sitnikov
* Funded entirely or partially by GO
Annotation Progress
Annotation Type | Dec 5 2012 | Dec 5 2013 | Change | % change | |
---|---|---|---|---|---|
Total Genes annotated with at least one GO term of any kind | 25452 | 25406 | TBA | TBA | |
Total annotations: | 286957 | 303195 | TBA | TBA | |
Total non-IEA Annotation | |||||
Total Number of Genes: | 24550 | 24597 | TBA | TBA | |
Total Annotations: | 193088 | 208808 | |||
Annotation by Direct Experiment | |||||
MGI Curated Genes | 11104 | 11558 | |||
MGI Curated Anntations | 70615 | 75497 | |||
GOA Curated Genes: | 3475 | 4067 | |||
GOA Curated Annotations: | 18055 | 21976 | |||
Annotation by Orthology | |||||
Total Genes Annotated by Orthology | 9451 | 9826 | |||
Total Orthology Annotation | 68621 | 74777 | |||
Genes Annotated by Human Orthology Load (GOA) | 7756 | 8177 | |||
Total Annotation by Human Orthology Load | 42237 | 46001 | |||
Genes annotated by Rat Orthology Load (RGD) | 4083 | 4160 | |||
Total Annotations by Rat Orthology Load | 23323 | 24575 | |||
IEA Annotation | |||||
Total Genes with IEA | 16372 | ||||
Total IEA annotations | 93869 | ||||
Total Genes with SwissProt to GO | 15971 | ||||
Total SwissProt to GO Annotations | 64733 | ||||
Total Genes with Interpro to GO | 9792 | ||||
Total Interpro to GO Annotations | 27804 | ||||
Total Genes with EC to GO Annotations | 944 | ||||
Total EC to GO annotations | 1332 |
Methods and strategies for annotation
(please note % effort on literature curation vs. computational annotation methods)
a. Literature curation:
b. Computational annotation strategies:
c. Priorities for annotation
Presentations and Publications
a. Papers with substantial GO content
b. Presentations including Talks and Tutorials and Teaching
c. Poster presentations
Other Highlights:
A. Ontology Development Contributions:
B. Annotation Outreach and User Advocacy Efforts:
C. Other Highlights: