Making a release version

Saving implied links and removing foreign terms from in an XP file prior to release

• Step 1: Save with 'save implied links' (save for presentation) selected.
• Step 2: Add auto-defs using autodef.pl
• Step 3: Strip out genus lines of intersections and convert differentiae to regular relationships. To do this use:

grep -v "intersection_of\: [Aa-Zz]*\:[0-9].* \!" tmp.obo | sed 's/^intersection_of\:/relationship\:/' >

• • Note 1: Relationships in differentia are not instantiated during step 1 But perhaps they should be (see ticket*) . This step instantiates them.
  • Note 2: It is vital to do this before step 4, otherwise highly dangerous dangling intersections result from disallowing dangling parents)
• Step 4: Strip out foriegn terms. To do this: Save with filter selecting terms that have <insert ID prefix of your ontology>.

Check 'always save properties'. Do not check 'allow dangling parents'

• Step 5: Save with filter to strip redundancy.
  • Note - relies on redundancy filters being good. Currently (12/08), they are good for