Manager 03September2014: Difference between revisions
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*David: continue to get sourceforget items down, and get | *David: continue to get sourceforget items down, and get | ||
*Suzi - the order of the card should reflect priority. come off when it is done. | *Suzi - the order of the card should reflect priority. come off when it is done. | ||
====Common annotation framework (Chris)==== | |||
*Notura - beta test released. Can create a title to a new model. Create a new model. Working on LEGO example. | |||
*Authentification - is working now. Take it off from the board. | |||
*Rama-enrichment tool lacking some of the nice feature. When will be improved. | |||
*Chris - soon. | |||
====Outreach and usability (Rama)==== | |||
*GO help - 1 email a day. | |||
*google analytics - Amigo - 20K sessions first month, 8000 users | |||
**Suzi: Anyway to tell internal from external? | |||
**Rama: Not yet. | |||
*Will show full results at the barcelona meeting | |||
*Moni has made a video for the GO website. | |||
*Annotation advocay - documents for new groups to create annotation, but has not trained new annotation groups in the last quarter. | |||
**Rachel - Prudence will give training to (?) | |||
*RCA annotation - review and remove. | |||
**Chris- use a script? | |||
**Judy - still need manual review to see if there are new evidences. | |||
**Paul T. - a script may help find new evidences. | |||
====PAINT curation (Huaiyu)==== | |||
*Jamboree still going, but slow. Marc is the biggest contributor. | |||
*New PANTHER build to support the current version of reference proteome is underway. | |||
**The targeted release date is the end of year. | |||
** It will have around 100 genomes, which includes the current 86 genomes, and 20 new plant genomes. However, we will remove a few low quality genomes. Suzi may be able to provide a few examples. | |||
**Suzi: Only see it in a limited number of families. What if it is bad in the family, but fine in the others? | |||
**Huaiyu: We will compile the list, and probably use a script to check across the entire library. | |||
**Suzi: We should communicate this to the reference proteome team. | |||
**Paul T.: Yes this is the plan. |
Revision as of 13:08, 3 September 2014
On call:
Trello Board Link:
https://trello.com/b/IdtTLGEt/go-priorities
Additional Agenda Items
- ECO development? It has been very slow.
Minutes
ECO development
- Rama: protein2go displays ECO code for evidence. It is slow to add.
- David: Is the project still funded?
- Pascale: Submitted 20+ terms with definition back in June. Still haven’t heard anything back from Marcus.
- Suzi: Continue to work with Marcus.
Trello board updates
- Suzi: Trello board - anything needs to be discussed, not completed in the same day, should be added to the Trello board. Take it off when it is completed.
Ontology update (David)
- Triage SF items - Paola almost finish the sourceforge minutes.
- Protege testing - It is working. Still use OBO-edit with OBO file. For more complicated file, convert it to owl file and open it with Protege, and then convert back to OBO.
- Chris asked why not using Protege all the time.
- David: OBO editor has better visualization, and is easier to use.
- pattern/template development - get reasoning to work in part-of inference. Sometimes it is difficult, eg., myocardium is part_of heart, but development of myocardium is not part of development of heart.
- Assess PT's plan on MF change - David OS is working on it.
- Cell cycle ontology fixes - Jane introdices phases of cell cycle.. pretty close to be completed.
- protege5 - switch soon
- protein binding - continue to work on it.
- small protein - rama will update at the next call. ubiquitin ligase
- LEGO example - like to use noctura for col 16 data. problem is where to get resource for that.
- Judy - what is the highest priority?
- David: continue to get sourceforget items down, and get
- Suzi - the order of the card should reflect priority. come off when it is done.
Common annotation framework (Chris)
- Notura - beta test released. Can create a title to a new model. Create a new model. Working on LEGO example.
- Authentification - is working now. Take it off from the board.
- Rama-enrichment tool lacking some of the nice feature. When will be improved.
- Chris - soon.
Outreach and usability (Rama)
- GO help - 1 email a day.
- google analytics - Amigo - 20K sessions first month, 8000 users
- Suzi: Anyway to tell internal from external?
- Rama: Not yet.
- Will show full results at the barcelona meeting
- Moni has made a video for the GO website.
- Annotation advocay - documents for new groups to create annotation, but has not trained new annotation groups in the last quarter.
- Rachel - Prudence will give training to (?)
- RCA annotation - review and remove.
- Chris- use a script?
- Judy - still need manual review to see if there are new evidences.
- Paul T. - a script may help find new evidences.
PAINT curation (Huaiyu)
- Jamboree still going, but slow. Marc is the biggest contributor.
- New PANTHER build to support the current version of reference proteome is underway.
- The targeted release date is the end of year.
- It will have around 100 genomes, which includes the current 86 genomes, and 20 new plant genomes. However, we will remove a few low quality genomes. Suzi may be able to provide a few examples.
- Suzi: Only see it in a limited number of families. What if it is bad in the family, but fine in the others?
- Huaiyu: We will compile the list, and probably use a script to check across the entire library.
- Suzi: We should communicate this to the reference proteome team.
- Paul T.: Yes this is the plan.