Manager 1July2015: Difference between revisions
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(Created page with "Category:Managers =Agenda= ===Minting DOIs for GO_REFs (Rama)=== Mike Cherry now has the power to mint (create) DOIs. We should create DOIs for GO_Refs so referring to th...") |
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Kimberly and Rama talked about the next steps (make a GAF file, a config file, gp2protein file etc). Once they are ready with the files those taxons will be filtered out of the GOA file. | Kimberly and Rama talked about the next steps (make a GAF file, a config file, gp2protein file etc). Once they are ready with the files those taxons will be filtered out of the GOA file. | ||
WB would still like to make certain we are putting the correct things in the gp2protein file, specifically wrt UniProtKB isoforms. | |||
The downstream uses for the gp2protein file include: 1) Protein2GO - maps gene IDs to UniProtKB IDs to attach PAINT annotations to proteins; 2) | |||
Revision as of 12:03, 30 June 2015
Agenda
Minting DOIs for GO_REFs (Rama)
Mike Cherry now has the power to mint (create) DOIs. We should create DOIs for GO_Refs so referring to them is easy etc.
Obsoleting relationships (Rama)
- We need to have a process in place to obsolete relationships (like we do for GO terms)
- There should be one master file and all other tools/files should be in sync with that file (should the master file be gorel.obo?)
GAF for New worm species (Rama)
WormBase will be submitting annotation files for some additional species, namely:
Onchocerca volvulus Brugia malayi Strongyloides ratti C. briggsae
Kimberly and Rama talked about the next steps (make a GAF file, a config file, gp2protein file etc). Once they are ready with the files those taxons will be filtered out of the GOA file. WB would still like to make certain we are putting the correct things in the gp2protein file, specifically wrt UniProtKB isoforms. The downstream uses for the gp2protein file include: 1) Protein2GO - maps gene IDs to UniProtKB IDs to attach PAINT annotations to proteins; 2)