Manager 20Aug2014

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On call

Judy, Suzi, Chris, Rama, Pascale, Kimberly, David

Agenda

Trello board

https://trello.com/b/IdtTLGEt/go-priorities

GOC meeting Barcelona

http://wiki.geneontology.org/index.php/2014_Barcelona_GOC_Meeting_Agenda

  • People should add items to the wiki

Conf. Call with Phil Bourne (NIH)

NAR Paper

  • Judy reminder about upcoming database issue
  • Moni and Harold are working on a draft
  • Aiming for September 15th deadline, but will likely need a little more time
  • Paper focuses on updates and enhancements to the project, also provides overall summary with key info (e.g., contact)

SourceForge Clearance Jamboree

  • Resolved a number of outstanding SourceForge tickets - Paola is compiling the numbers
  • By end of week, hopefully all of Val's outstanding tickets will also be resolved

Overhaul of Molecular Function

  • Ontology editors looked at the proposal and liked much of the proposed changes
  • Where would the MF overhaul fit in with ontology development priorities?
  • Would be good to have more people trained in ontology development
  • Also testing out web Protege - a more long term goal

Other Areas of Ontology Development

  • Working on Uberon developmental process
  • Cell cycle - Jane continues to work on this
  • New terms - TermGenie
  • New terms - SourceForge
  • Areas where there is poor representation in the ontology, or ontology is confusing - these can be more major projects

=Noctua

  • Chris - new release of Noctua
  • Most visible change is user login
  • Also Noctua annotations are loading into the dev version of AmiGO (will give demo at Barcelona)
  • This is very useful as we get more models; curators can search for annotations in dev version of AmiGO
  • Chris will contact

Text Mining=

  • Yuling is training an enzymatic activity document classifier (SVM)
  • Will investigate feasibility of SVM on PMC corpus for prioritizing papers based on data type