Manager 20Aug2014
On call
Judy, Suzi, Chris, Rama, Pascale, Kimberly, David
Agenda
Trello board
https://trello.com/b/IdtTLGEt/go-priorities
GOC meeting Barcelona
http://wiki.geneontology.org/index.php/2014_Barcelona_GOC_Meeting_Agenda
- People should add items to the wiki
Conf. Call with Phil Bourne (NIH)
NAR Paper
- Judy reminder about upcoming database issue
- Moni and Harold are working on a draft
- Aiming for September 15th deadline, but will likely need a little more time
- Paper focuses on updates and enhancements to the project, also provides overall summary with key info (e.g., contact)
SourceForge Clearance Jamboree
- Resolved a number of outstanding SourceForge tickets - Paola is compiling the numbers
- By end of week, hopefully all of Val's outstanding tickets will also be resolved
Overhaul of Molecular Function
- Ontology editors looked at the proposal and liked much of the proposed changes
- Where would the MF overhaul fit in with ontology development priorities?
- Would be good to have more people trained in ontology development
- Also testing out web Protege - a more long term goal
Other Areas of Ontology Development
- Working on Uberon developmental process
- Cell cycle - Jane continues to work on this
- New terms - TermGenie
- New terms - SourceForge
- Areas where there is poor representation in the ontology, or ontology is confusing - these can be more major projects
=Noctua
- Chris - new release of Noctua
- Most visible change is user login
- Also Noctua annotations are loading into the dev version of AmiGO (will give demo at Barcelona)
- This is very useful as we get more models; curators can search for annotations in dev version of AmiGO
- Chris will contact
Text Mining=
- Yuling is training an enzymatic activity document classifier (SVM)
- Will investigate feasibility of SVM on PMC corpus for prioritizing papers based on data type