Manager 20Aug2014
On call
Judy, Suzi, Chris, Rama, Pascale, Kimberly, David
Minutes
Trello board
https://trello.com/b/IdtTLGEt/go-priorities
GOC meeting Barcelona
http://wiki.geneontology.org/index.php/2014_Barcelona_GOC_Meeting_Agenda
- People should add items to the wiki
Conf. Call with Phil Bourne (NIH)
NAR Paper
- Judy reminder about upcoming database issue
- Moni and Harold are working on a draft
- Aiming for September 15th deadline, but will likely need a little more time
- Paper focuses on updates and enhancements to the project, also provides overall summary with key info (e.g., contact)
SourceForge Clearance Jamboree
- Resolved a number of outstanding SourceForge tickets - Paola is compiling the numbers
- By end of week, hopefully all of Val's outstanding tickets will also be resolved
Overhaul of Molecular Function
- Ontology editors looked at the proposal and liked much of the proposed changes
- Where would the MF overhaul fit in with ontology development priorities?
- Would be good to have more people trained in ontology development
- Also testing out web Protege - a more long term goal
Other Areas of Ontology Development
- Working on Uberon developmental process, perhaps a bigger scope
- Cell cycle - Jane continues to work on this
- New terms - TermGenie
- New terms - SourceForge
- For SourceForge, may be necessary to move on from items if submitter doesn't respond to follow-up questions
- Areas where there is poor representation in the ontology, or ontology is confusing - these can be more major projects
- ACTION ITEM - need to start triaging items, but still need to discuss adding more resources to ontology development
- Major items could get their own Trello cards (with sub-items, if needed)
- As an example, the ubiquitination project has now become much larger, now encompasses other small protein transferases (e.g., SUMOylation, NEDDylation) - now a Trello card for this
- Bring in more experts to help?
Noctua
- Chris - new release of Noctua
- Most visible change is user login
- Also Noctua annotations are loading into the dev version of AmiGO (will give demo at Barcelona)
- This is very useful as we get more models; curators can search for annotations in dev version of AmiGO
- Chris will contact
Text Mining
- Yuling is training an enzymatic activity document classifier (SVM)
- Will investigate feasibility of SVM on PMC corpus for prioritizing papers based on data type
Annotation Advocacy
- Moving to Jenkins - progressing
- Moni is working with Rachael and Rama on documentation for submitting annotations
- Annotation extensions - ongoing education; every annotation call things come up, are discussed, and documentation is revised as needed
- Annotation metrics - any work done on auto-generating reports?
- Numbers are available on website; but should we also be measuring and reporting information content?
- Can we tap into software support from other members to help with this?
- Include GAF errors
Phylogenetic-based Annotation
- Had in-person component of the tree annotation jamboree
- Went well, got lots of trees annotated talked about metrics