Manager 3June2015: Difference between revisions
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(Created page with "=Agenda= ===Welcome to Melanie=== * She is the new GO project lead at UniProt ==GAF2.1 (addition of pipe/comma to With/From column) (Rama)== * I have put together some specs...") |
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=Agenda= | =Agenda= | ||
==Welcome to Melanie== | |||
* She is the new GO project lead at UniProt | * She is the new GO project lead at UniProt | ||
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Are there any concerns? | Are there any concerns? | ||
==Annotating Complexes with GO== | |||
IntAct folks are making GO annotations for complexes and they have sent us some questions about how to annotate tricky situations etc. Myself and Kimberly have gone through the proposal. We recommend forming a working group to discuss the issues and to come up with guidelines. Any thoughts? | |||
==Author feedback form== | ==Author feedback form== |
Revision as of 16:26, 2 June 2015
Agenda
Welcome to Melanie
- She is the new GO project lead at UniProt
GAF2.1 (addition of pipe/comma to With/From column) (Rama)
- I have put together some specs to make this happen.
- http://wiki.geneontology.org/index.php/GAF_2.1_specs
- Documentation on the GOC website for GAF 2.1- http://geneontology.org/page/go-annotation-file-gaf-format-21
- Annotation guidelines for use of pipe and comma is pending
- test file for checking scripts is available in github
- protein2GO is almost ready to make this option public
- We want to announce this version on July 1st.
Are there any concerns?
Annotating Complexes with GO
IntAct folks are making GO annotations for complexes and they have sent us some questions about how to annotate tricky situations etc. Myself and Kimberly have gone through the proposal. We recommend forming a working group to discuss the issues and to come up with guidelines. Any thoughts?
Author feedback form
Motivation
- We have been asked several times about the quality of our annotations
- Paul T mentioned that, at the Synapse meeting, an author said the annotations made from his paper were not accurate.
- How about we send a form to authors and ask if the annotations made from their papers are correct or not?
http://wiki.geneontology.org/index.php/Proposal_for_Author_Feedback_for_annotations#Specifications
Master GAF file
- Many of our users who want all the annotations for all taxons grab the UniProt file. We should be providing a master GAF file with all annotations