Difference between revisions of "Manager 3June2015"

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(Annotating Complexes with GO)
(There are not 46k human genes)
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This is consistently confusing users and even us. Need to fix:
 
This is consistently confusing users and even us. Need to fix:
 
* https://trello.com/c/holv0gEG/151-reference-proteome-should-be-default
 
* https://trello.com/c/holv0gEG/151-reference-proteome-should-be-default
 +
Human Refernece Proteome Set- http://www.uniprot.org/proteomes/UP000005640
  
 
==GAF2.1 (addition of pipe/comma to With/From column) (Rama)==
 
==GAF2.1 (addition of pipe/comma to With/From column) (Rama)==

Revision as of 07:21, 3 June 2015

Agenda

Welcome to Melanie Courtot

  • She is the new GO project lead at UniProt

Adding people to managers list

  • Make sure Moni and Melanie or on the list

Update on GitHub Migration

There are not 46k human genes

This is consistently confusing users and even us. Need to fix:

Human Refernece Proteome Set- http://www.uniprot.org/proteomes/UP000005640

GAF2.1 (addition of pipe/comma to With/From column) (Rama)

Are there any concerns?

Annotating Complexes with GO

IntAct folks are making GO annotations for complexes and they have sent us some questions about how to annotate tricky situations etc. Myself and Kimberly have gone through the proposal. We recommend forming a working group to discuss the issues and to come up with guidelines. Is Pro making GO annotations to complexes? Any thoughts?

Author feedback form

Motivation

  • We have been asked several times about the quality of our annotations
  • Paul T mentioned that, at the Synapse meeting, an author said the annotations made from his paper were not accurate.
  • How about we send a form to authors and ask if the annotations made from their papers are correct or not?

http://wiki.geneontology.org/index.php/Proposal_for_Author_Feedback_for_annotations#Specifications

Master GAF file

  • Many of our users who want all the annotations for all taxons grab the UniProt file. We should be providing a master GAF file with all annotations

No more merge ?

(Pascale email; see minutes from Ontology call http://wiki.geneontology.org/index.php/Ontology_meeting_2015-05-28