Revision as of 17:15, 3 August 2015

Agenda

As mentioned a few weeks ago, WB and WB-ParaSite are preparing to start submitting additional GAFs for other nematode species and for platyhelminthes.
We need to decide on appropriate file names for these GAFs.
Looking at examples of what is currently submitted by groups that submit multiple files:
- gene_association.GeneDB_Lmajor.gz
- gene_association.PAMGO_Atumefaciens.gz
- gene_association.goa_chicken.gz
- gene_association.goa_ref_cow.gz
- gene_association.goa_uniprot_noiea.gz
Wondering if we could come up with standardized naming for GAFs. I propose a version including the taxon ID and a name that matches the label associated with the taxon ID:
- gene_association.submittinggroup_taxonid_gspecies.gz
- gene_association.submittinggroup_taxonid_classificationname.gz
  - gene_association.goa_9913_btaurus.gz
  - gene_association.wb_6239_celegans.gz
  - gene_association.wb_6231_nematoda.gz
  - gene_association.wb_6157_platyhelminthes.gz
Other suggestions?
Does this work for strain-specific files?
What about files like the noieas file that UniProt submits?
What about corresponding identifier mapping files?

Planning/schedule/time for side meetings?

@@ Line 13: / Line 13: @@
 *Wondering if we could come up with standardized naming for GAFs.  I propose a version including the taxon ID and a name that matches the label associated with the taxon ID:
 **gene_association.submittinggroup_taxonid_gspecies.gz
-**gene_association.submittinggroup_taxonid_commonname.gz
+**gene_association.submittinggroup_taxonid_classificationname.gz
 ***gene_association.goa_9913_btaurus.gz
 ***gene_association.wb_6239_celegans.gz