Manager 5August2015: Difference between revisions
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==Symposium day in Washington DC== | ==Symposium day in Washington DC== | ||
*Proposed topics for [http://wiki.geneontology.org/index.php/ | |||
*[http://wiki.geneontology.org/index.php/2015_Washington_DC_GOC_Symposium_Agenda The proposed agenda for the symposium can be found here]. | |||
*Donna has agreed to give a talk and we are currently waiting an update from Trey. | |||
*There is not a tentative count for participants, and the symposium has not yet been announced outside the GOC lists. | |||
==Agenda for main GOC meeting== | |||
*Proposed topics for the [http://wiki.geneontology.org/index.php/2015_Washington_DC_GOC_Meeting_Agenda agenda for main meeting can be found here]. | |||
*A list of [http://wiki.geneontology.org/index.php/Sign_Up_GOC2015 participants who said they are planning to attend the meeting is found here]. The list of currently registered participants is available from Jackson Lab, but we have not asked for a count yet. | *A list of [http://wiki.geneontology.org/index.php/Sign_Up_GOC2015 participants who said they are planning to attend the meeting is found here]. The list of currently registered participants is available from Jackson Lab, but we have not asked for a count yet. | ||
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*Will there be time for side meetings? | *Will there be time for side meetings? | ||
==GO user survey== | ==GO user survey== | ||
Revision as of 11:14, 5 August 2015
Agenda
GAF Naming Conventions - Standardization? (Kimberly)
- As mentioned a few weeks ago, WB and WB-ParaSite are preparing to start submitting additional GAFs for other nematode species and for platyhelminthes.
- We need to decide on appropriate file names for these GAFs.
- Looking at examples of what is currently submitted by groups that submit multiple files:
- gene_association.GeneDB_Lmajor.gz
- gene_association.PAMGO_Atumefaciens.gz
- gene_association.goa_chicken.gz
- gene_association.goa_ref_cow.gz
- gene_association.goa_uniprot_noiea.gz
- Wondering if we could come up with standardized naming for GAFs. I propose a version including the taxon ID and a name that matches the label associated with the taxon ID:
- gene_association.submittinggroup_taxonid_gspecies.gz
- gene_association.submittinggroup_taxonid_classificationname.gz
- gene_association.goa_9913_btaurus.gz
- gene_association.wb_6239_celegans.gz
- gene_association.wb_6231_nematoda.gz
- gene_association.wb_6157_platyhelminthes.gz
- Other suggestions?
- Does this work for strain-specific files?
- What about files like the 'noieas' file that UniProt submits?
- Corresponding identifier mapping files would stay the same, e.g., gp2protein.wb?
Symposium day in Washington DC
- Donna has agreed to give a talk and we are currently waiting an update from Trey.
- There is not a tentative count for participants, and the symposium has not yet been announced outside the GOC lists.
Agenda for main GOC meeting
- Proposed topics for the agenda for main meeting can be found here.
- A list of participants who said they are planning to attend the meeting is found here. The list of currently registered participants is available from Jackson Lab, but we have not asked for a count yet.
- Will there be time for side meetings?
GO user survey
Please let Paola know if you have any feedback. https://www.surveymonkey.com/r/PDMRXBW
Trello board
https://trello.com/b/IdtTLGEt/go-priorities