Difference between revisions of "Manager 5August2015"

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(Symposium day in Washington DC)
(Agenda)
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*What about files like the 'noieas' file that UniProt submits?
 
*What about files like the 'noieas' file that UniProt submits?
 
*Corresponding identifier mapping files would stay the same, e.g., gp2protein.wb?
 
*Corresponding identifier mapping files would stay the same, e.g., gp2protein.wb?
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==Symposium day in Washington DC==
 
==Symposium day in Washington DC==
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*Will there be time for side meetings?
 
*Will there be time for side meetings?
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==Agenda for main GOC meeting==
 
==Agenda for main GOC meeting==
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==GO user survey==
 
==GO user survey==
 
Please let Paola know if you have any feedback. https://www.surveymonkey.com/r/PDMRXBW  
 
Please let Paola know if you have any feedback. https://www.surveymonkey.com/r/PDMRXBW  
 +
  
 
==Trello board==
 
==Trello board==

Revision as of 07:16, 5 August 2015


Agenda

GAF Naming Conventions - Standardization? (Kimberly)

  • As mentioned a few weeks ago, WB and WB-ParaSite are preparing to start submitting additional GAFs for other nematode species and for platyhelminthes.
  • We need to decide on appropriate file names for these GAFs.
  • Looking at examples of what is currently submitted by groups that submit multiple files:
    • gene_association.GeneDB_Lmajor.gz
    • gene_association.PAMGO_Atumefaciens.gz
    • gene_association.goa_chicken.gz
    • gene_association.goa_ref_cow.gz
    • gene_association.goa_uniprot_noiea.gz
  • Wondering if we could come up with standardized naming for GAFs. I propose a version including the taxon ID and a name that matches the label associated with the taxon ID:
    • gene_association.submittinggroup_taxonid_gspecies.gz
    • gene_association.submittinggroup_taxonid_classificationname.gz
      • gene_association.goa_9913_btaurus.gz
      • gene_association.wb_6239_celegans.gz
      • gene_association.wb_6231_nematoda.gz
      • gene_association.wb_6157_platyhelminthes.gz
  • Other suggestions?
  • Does this work for strain-specific files?
  • What about files like the 'noieas' file that UniProt submits?
  • Corresponding identifier mapping files would stay the same, e.g., gp2protein.wb?


Symposium day in Washington DC

  • Donna Slonim has agreed to give a talk and we are currently waiting an update from Trey Ideker.
  • There is not a tentative count for participants, and the symposium has not yet been announced outside the GOC lists.
  • Will there be time for side meetings?


Agenda for main GOC meeting


GO user survey

Please let Paola know if you have any feedback. https://www.surveymonkey.com/r/PDMRXBW


Trello board

https://trello.com/b/IdtTLGEt/go-priorities

Minutes