Difference between revisions of "Manager 7May2014"

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==Agenda==
 
==Agenda==
  
==GO meeting organization==
+
===GO meeting organization===
 
* Dates are set: Oct 13-15, 2014 - 3 full days (Room availability yet to be confirmed)
 
* Dates are set: Oct 13-15, 2014 - 3 full days (Room availability yet to be confirmed)
 
* Registration deadline: Sept 5th
 
* Registration deadline: Sept 5th
Line 11: Line 11:
 
* I'll keep people updated as soon as there is more information coming up.  
 
* I'll keep people updated as soon as there is more information coming up.  
 
- Pascale
 
- Pascale
 +
 +
===Proposed priorities for GOC working groups===
 +
 +
====Ontology development====
 +
* term requests
 +
* OWLification
 +
* support for LEGO (MF restructuring, …)
 +
* begin and end functions for cellular processes
 +
* logical definitions for terms that include cell type, anatomy terms
 +
* MF and RHEA
 +
====Literature annotation====
 +
* QC metrics for annotations
 +
* defining annotation standards, training, documentation
 +
* focus on planned PAINT annotation families
 +
 +
====Phylogenetic annotation====
 +
* Jamboree until Barcelona meeting: GO-funded curators should spend GO-funded time on this project through end of Sept.? [5 curators full time for  6 weeks or 20% time for 5-6 curators]= 5-10 families per week
 +
* paper on QC assessment using PAINT
 +
 +
====Software====
 +
* Drupal Web Site & AmiGO  (Seth needs to move on, Moni + Stanford?) 
 +
* migrate all remaining cron jobs to Jenkins (Heiko)
 +
* LEGO annotation tool prototype release (Seth)
 +
* Complete migration of ontology editing to full OWL (protege plug-ins, Heiko, Chris, Simon)
 +
* jsPAINT in view-only mode made public (Seth)
 +
* jsPAINT roll-out (Seth, Suzi)
 +
* mySQL/LEAD retirement (will take a while)
 +
* Amazon Cloud for GO website and AmiGO (Mike/Stuart/Seth)
 +
* CANTO deployment (Chris, Seth, Kim, Rama)
 +
* LEGO mirrors of graphRDF/OWL
 +
* GAF-GPAD roundtripping (Mary?)
 +
* LEGO/OWL ←→ GPAD converters (Mary?)
 +
* Graphic display of enrichment results (Mary?)
 +
* Term Genie templates for CL and UBERON (Heiko, Chris)
 +
* Paper Viewer release-able (i.e. connected to grid/table annot tool, Owl) [Hans-Michael, Juancarlos, Yuling]
 +
* Stabilized enrichment tool (??USC)
 +
* GO-mine retirement, unplugging (Stanford)
 +
* Getting Textpresso to work with MF (in addition to CCC) [Hans-Michael, Kimberly]
 +
* authentication/authorization (software group mutual choice)
 +
* Orion/LEGO import from Reactome
 +
 +
====Community====
 +
* Annotation training material on web site
 +
* Annotation/help forum

Revision as of 06:58, 7 May 2014

Present:

Agenda

GO meeting organization

  • I'll keep people updated as soon as there is more information coming up.

- Pascale

Proposed priorities for GOC working groups

Ontology development

  • term requests
  • OWLification
  • support for LEGO (MF restructuring, …)
  • begin and end functions for cellular processes
  • logical definitions for terms that include cell type, anatomy terms
  • MF and RHEA

Literature annotation

  • QC metrics for annotations
  • defining annotation standards, training, documentation
  • focus on planned PAINT annotation families

Phylogenetic annotation

  • Jamboree until Barcelona meeting: GO-funded curators should spend GO-funded time on this project through end of Sept.? [5 curators full time for 6 weeks or 20% time for 5-6 curators]= 5-10 families per week
  • paper on QC assessment using PAINT

Software

  • Drupal Web Site & AmiGO (Seth needs to move on, Moni + Stanford?)
  • migrate all remaining cron jobs to Jenkins (Heiko)
  • LEGO annotation tool prototype release (Seth)
  • Complete migration of ontology editing to full OWL (protege plug-ins, Heiko, Chris, Simon)
  • jsPAINT in view-only mode made public (Seth)
  • jsPAINT roll-out (Seth, Suzi)
  • mySQL/LEAD retirement (will take a while)
  • Amazon Cloud for GO website and AmiGO (Mike/Stuart/Seth)
  • CANTO deployment (Chris, Seth, Kim, Rama)
  • LEGO mirrors of graphRDF/OWL
  • GAF-GPAD roundtripping (Mary?)
  • LEGO/OWL ←→ GPAD converters (Mary?)
  • Graphic display of enrichment results (Mary?)
  • Term Genie templates for CL and UBERON (Heiko, Chris)
  • Paper Viewer release-able (i.e. connected to grid/table annot tool, Owl) [Hans-Michael, Juancarlos, Yuling]
  • Stabilized enrichment tool (??USC)
  • GO-mine retirement, unplugging (Stanford)
  • Getting Textpresso to work with MF (in addition to CCC) [Hans-Michael, Kimberly]
  • authentication/authorization (software group mutual choice)
  • Orion/LEGO import from Reactome

Community

  • Annotation training material on web site
  • Annotation/help forum