Difference between revisions of "Manager 7May2014"
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==Agenda== | ==Agenda== | ||
| − | ==GO meeting organization== | + | ===GO meeting organization=== |
* Dates are set: Oct 13-15, 2014 - 3 full days (Room availability yet to be confirmed) | * Dates are set: Oct 13-15, 2014 - 3 full days (Room availability yet to be confirmed) | ||
* Registration deadline: Sept 5th | * Registration deadline: Sept 5th | ||
| Line 11: | Line 11: | ||
* I'll keep people updated as soon as there is more information coming up. | * I'll keep people updated as soon as there is more information coming up. | ||
- Pascale | - Pascale | ||
| + | |||
| + | ===Proposed priorities for GOC working groups=== | ||
| + | |||
| + | ====Ontology development==== | ||
| + | * term requests | ||
| + | * OWLification | ||
| + | * support for LEGO (MF restructuring, …) | ||
| + | * begin and end functions for cellular processes | ||
| + | * logical definitions for terms that include cell type, anatomy terms | ||
| + | * MF and RHEA | ||
| + | ====Literature annotation==== | ||
| + | * QC metrics for annotations | ||
| + | * defining annotation standards, training, documentation | ||
| + | * focus on planned PAINT annotation families | ||
| + | |||
| + | ====Phylogenetic annotation==== | ||
| + | * Jamboree until Barcelona meeting: GO-funded curators should spend GO-funded time on this project through end of Sept.? [5 curators full time for 6 weeks or 20% time for 5-6 curators]= 5-10 families per week | ||
| + | * paper on QC assessment using PAINT | ||
| + | |||
| + | ====Software==== | ||
| + | * Drupal Web Site & AmiGO (Seth needs to move on, Moni + Stanford?) | ||
| + | * migrate all remaining cron jobs to Jenkins (Heiko) | ||
| + | * LEGO annotation tool prototype release (Seth) | ||
| + | * Complete migration of ontology editing to full OWL (protege plug-ins, Heiko, Chris, Simon) | ||
| + | * jsPAINT in view-only mode made public (Seth) | ||
| + | * jsPAINT roll-out (Seth, Suzi) | ||
| + | * mySQL/LEAD retirement (will take a while) | ||
| + | * Amazon Cloud for GO website and AmiGO (Mike/Stuart/Seth) | ||
| + | * CANTO deployment (Chris, Seth, Kim, Rama) | ||
| + | * LEGO mirrors of graphRDF/OWL | ||
| + | * GAF-GPAD roundtripping (Mary?) | ||
| + | * LEGO/OWL ←→ GPAD converters (Mary?) | ||
| + | * Graphic display of enrichment results (Mary?) | ||
| + | * Term Genie templates for CL and UBERON (Heiko, Chris) | ||
| + | * Paper Viewer release-able (i.e. connected to grid/table annot tool, Owl) [Hans-Michael, Juancarlos, Yuling] | ||
| + | * Stabilized enrichment tool (??USC) | ||
| + | * GO-mine retirement, unplugging (Stanford) | ||
| + | * Getting Textpresso to work with MF (in addition to CCC) [Hans-Michael, Kimberly] | ||
| + | * authentication/authorization (software group mutual choice) | ||
| + | * Orion/LEGO import from Reactome | ||
| + | |||
| + | ====Community==== | ||
| + | * Annotation training material on web site | ||
| + | * Annotation/help forum | ||
Revision as of 06:58, 7 May 2014
Contents
Present:
Agenda
GO meeting organization
- Dates are set: Oct 13-15, 2014 - 3 full days (Room availability yet to be confirmed)
- Registration deadline: Sept 5th
- A registration site has been set up : https://docs.google.com/forms/d/1Q8nudtqusn7OrcJO1IC7KZPLUy2Rijkr_k6tI6OQUbI/viewform?sid&c=0&w=1&token&usp=mail_form_link
- I'll keep people updated as soon as there is more information coming up.
- Pascale
Proposed priorities for GOC working groups
Ontology development
- term requests
- OWLification
- support for LEGO (MF restructuring, …)
- begin and end functions for cellular processes
- logical definitions for terms that include cell type, anatomy terms
- MF and RHEA
Literature annotation
- QC metrics for annotations
- defining annotation standards, training, documentation
- focus on planned PAINT annotation families
Phylogenetic annotation
- Jamboree until Barcelona meeting: GO-funded curators should spend GO-funded time on this project through end of Sept.? [5 curators full time for 6 weeks or 20% time for 5-6 curators]= 5-10 families per week
- paper on QC assessment using PAINT
Software
- Drupal Web Site & AmiGO (Seth needs to move on, Moni + Stanford?)
- migrate all remaining cron jobs to Jenkins (Heiko)
- LEGO annotation tool prototype release (Seth)
- Complete migration of ontology editing to full OWL (protege plug-ins, Heiko, Chris, Simon)
- jsPAINT in view-only mode made public (Seth)
- jsPAINT roll-out (Seth, Suzi)
- mySQL/LEAD retirement (will take a while)
- Amazon Cloud for GO website and AmiGO (Mike/Stuart/Seth)
- CANTO deployment (Chris, Seth, Kim, Rama)
- LEGO mirrors of graphRDF/OWL
- GAF-GPAD roundtripping (Mary?)
- LEGO/OWL ←→ GPAD converters (Mary?)
- Graphic display of enrichment results (Mary?)
- Term Genie templates for CL and UBERON (Heiko, Chris)
- Paper Viewer release-able (i.e. connected to grid/table annot tool, Owl) [Hans-Michael, Juancarlos, Yuling]
- Stabilized enrichment tool (??USC)
- GO-mine retirement, unplugging (Stanford)
- Getting Textpresso to work with MF (in addition to CCC) [Hans-Michael, Kimberly]
- authentication/authorization (software group mutual choice)
- Orion/LEGO import from Reactome
Community
- Annotation training material on web site
- Annotation/help forum
