Manager Call 2016-03-2

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Follow-up on GO tools registry

For background, see

http://wiki.geneontology.org/index.php/Manager_Call_2016-02-03#GO_tools_registry

http://wiki.geneontology.org/index.php/Manager_Call_2016-02-03#GO_Tools_Registry_2

Update:

Following recommendations from a previous call, Paola sent to ELIXIR a revised version of the tools registry that does NOT include MOD-specific tools (i.e. MGI GO Browser, SGD Gene Ontology Slim Mapper, YeastMine) nor OBO-Edit. Anyone wishing for their MOD-specific tool to be listed in ELIXIR, please contact them separately. FYI, list sent to ELIXIR is visible at https://docs.google.com/spreadsheets/d/1-Gu6EhBXTDr35vOU2MwUVOzGAWXTAkIdARdad9UShRw/edit#gid=1268003428

Jon Ison alerts that "It may take some time for the entries to appear in bio.tools because it depends on a XSL->XML transformer which is under development".

Paola asked Jon how will these tools be labeled to show that they are GO-approved. Answer: "As for "GO approved", there's no support for that currently, however it will be considered in biotoolXSD 2.0, as an annotation on general "collections" such as this: https://github.com/bio-tools/biotoolsxsd/issues/16"

Once that is in place, we may evaluate linking out from ELIXIR to GO.

Paola also added GOrilla among recommended third-party enrichment tools on the GO website, here http://geneontology.org/page/go-enrichment-analysis

Project Update

We (Paola, David, Karen, Peter, Melanie) have begun working with Peter to align GO cilia-related processes with those in Reactome.