Manager Call 2016-06-1: Difference between revisions
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==Identifier Space in GO Annotations== | ==Identifier Space in GO Annotations== | ||
*In response to the May 18th call's discussion on gene and gene product identifier space (see [http://wiki.geneontology.org/index.php/Manager_Call_2015-05-18 minutes]), I've put together a spreadsheet that documents our current practice wrt for GAF and | *In response to the May 18th call's discussion on gene and gene product identifier space (see [http://wiki.geneontology.org/index.php/Manager_Call_2015-05-18 minutes]), I've put together a [https://docs.google.com/spreadsheets/d/1mp1sZkxmpZbofaaG9qcAU_16l9S7jpzjnuwGvtSkeIA/edit#gid=1674924999 spreadsheet] that documents our current practice wrt for GAF and GPAD: | ||
**Annotated Entity IDs | **Annotated Entity IDs | ||
**With/From Entity IDs (note only for gene and gene product) | **With/From Entity IDs (note only for gene and gene product) | ||
| Line 10: | Line 10: | ||
**Gene IDs only | **Gene IDs only | ||
**Broad range of gene, transcript, protein, protein complex entity IDs | **Broad range of gene, transcript, protein, protein complex entity IDs | ||
*At the top of the spreadsheet are three general questions that we need to consider - there may be more; please add if needed | |||
*The plan was to review the different approaches, debate the pros and cons and then either get more feedback or finalize the proposal for presentation on an annotation or all-hands call | *The plan was to review the different approaches, debate the pros and cons and then either get more feedback or finalize the proposal for presentation on an annotation or all-hands call | ||
Revision as of 10:44, 31 May 2016
Agenda
Identifier Space in GO Annotations
- In response to the May 18th call's discussion on gene and gene product identifier space (see minutes), I've put together a spreadsheet that documents our current practice wrt for GAF and GPAD:
- Annotated Entity IDs
- With/From Entity IDs (note only for gene and gene product)
- Annotation Extension Entity IDs (note only for gene and gene product)
- Annotation Isoform Entity IDs
- Then, for the purposes of discussion, I also added two other possible approaches:
- Gene IDs only
- Broad range of gene, transcript, protein, protein complex entity IDs
- At the top of the spreadsheet are three general questions that we need to consider - there may be more; please add if needed
- The plan was to review the different approaches, debate the pros and cons and then either get more feedback or finalize the proposal for presentation on an annotation or all-hands call
Periodic review of the Trello board
https://trello.com/b/IdtTLGEt/go-priorities
Minutes
Attendees:
Agenda: Paola; Minutes: Kimberly