Manager Call 2018-11-07
Meeting URL
Agenda
Montreal GOC Meeting Action Items and priorities
Reminder: SAB recommendations - high level priorities
- Major uses of GO
- mRNA expression analysis
- Proteomics data analysis
- Genetic data analysis
- DNA methylation analysis
- Other: (~50%) primarily comp biol and biomed informatics
- Keep doing: ontology + annotations = model of biology, broad accessibility to all
- And get even better: more expressive annotations, more QA and review, more collaboration, more APIs and better response times
SAB recommendations:
- increase focus on QA
- Leverage authors of curated papers (~150K papers have been used, link from PubMed to GO for annotated papers) ----review (and curate new)
- Review of older annotations, highly annotated genes
- Develop GO-CAM use cases, promote in tool developer community
- Empower developer community (push use of recent GO annotations/ontology in tools, developer guide, website guide, APIs, build an R package to update GO annotations)
Big picture/projects
What are our main priorities? What is the strategy to achieve them?
Kimberly, David, Pascale: Proposal for 2018/early 2019 priorities:
- GO website migration: Suzi L/Laurent-Philippe: Aim: Dec 1
- Data release pipeline: Pascale/Seth: Are there any blocking issues remaining? If not, we can de-prioritize this for now
- Noctua+GO-CAM repository: Kimberly/Seth:
- A developer is needed full time to develop until the Cambridge meeting:
- Tasks: (just a teaser):
- getting in all existing annotations in
- improve RO – who should do that? Including testing property chains
- work on reasoning
- fixing issues with pipeline (including GPAD output)
- GO rules (includes QC): Pascale/Eric: Improving reports: end of 2018, implement/fix some rules 4 rules /month?
Projects:
- Data release pipeline: Pascale/Seth
- GO rules (includes QC): Pascale/Eric
- GO website migration: Suzi L/Laurent-Philippe
- Noctua: Kimberly/Seth
- GO-CAM integration with other pathway resources: Paul/Ben
- QC: ->
- Annotation & ontology: no specific project
External
- CHEBI
- Complete proteomes
- Contributing groups
Action items
https://docs.google.com/document/d/13BIc-zYaxIkIfK21Jhfk74pNq2jvtjepFdSGd6twpdw/edit#