Manager Call 2019-03-13: Difference between revisions

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=== GPAD/GPI Specs ===
=== GPAD/GPI Specs ===
We were going to set up a call - has it be scheduled?
* We were going to set up a call - has it be scheduled?
** Chris was going to review current specs, particularly wrt SO/MSO
* Discuss expanding the gpi file to include other entities used in annotation, particularly the With/From field. e.g. variation IDs, RNAi experiment IDs, etc.
** This has come up in discussions with several curation groups, including MGI, WB, and Zfin





Revision as of 14:26, 11 March 2019

Agenda

  • Agenda: Huaiyu
  • Minutes: Suzi

Management

  • Update on all ongoing projects: https://github.com/orgs/geneontology/projects -
    • Is anyone encountering any roadblocks?
  • We need % effort from the different people involved in project for all projects with a delivery date/active projects
  • 'Gantt-chart' to manage projects: Hackathon tasks: how is that working ?

Discussion points

Carried over form last week:

Fate of "unmanaged" external2go files

https://github.com/geneontology/go-ontology/issues/16989

New IEAs (not InterPro2GO)

https://github.com/geneontology/helpdesk/issues/195

We decided earlier to not accept IEAs from outside groups, as all sequences would be run through the dependable InterPro2GO after uploading- but this group/method *seems* like they have more accurate annotations and higher coverage.

SynGO import

Long discussion last week - What's the next step ?

GPAD/GPI Specs

  • We were going to set up a call - has it be scheduled?
    • Chris was going to review current specs, particularly wrt SO/MSO
  • Discuss expanding the gpi file to include other entities used in annotation, particularly the With/From field. e.g. variation IDs, RNAi experiment IDs, etc.
    • This has come up in discussions with several curation groups, including MGI, WB, and Zfin


New topics

BioLink availability: plan to durably solve those issues (last week we had timeout, this morning internal server error) ?

Minutes

Present