Manager Call 2019-03-13: Difference between revisions
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* Discuss expanding the gpi file to include other entities used in annotation, particularly the With/From field. e.g. variation IDs, RNAi experiment IDs, etc. | * Discuss expanding the gpi file to include other entities used in annotation, particularly the With/From field. e.g. variation IDs, RNAi experiment IDs, etc. | ||
** This has come up in discussions with several curation groups, including MGI, WB, and Zfin | ** This has come up in discussions with several curation groups, including MGI, WB, and Zfin | ||
** How does the GO gpi file work fit in with Alliance data files? | |||
** Not all GO contributors are part of the Alliance, but it would be nice to have standardized file formats for other entities. | |||
'''New topics''' | '''New topics''' |
Revision as of 15:16, 11 March 2019
Agenda
- Agenda: Huaiyu
- Minutes: Suzi
Management
- Update on all ongoing projects: https://github.com/orgs/geneontology/projects -
- Is anyone encountering any roadblocks?
- We need % effort from the different people involved in project for all projects with a delivery date/active projects
- 'Gantt-chart' to manage projects: Hackathon tasks: how is that working ?
Discussion points
Carried over form last week:
Fate of "unmanaged" external2go files
https://github.com/geneontology/go-ontology/issues/16989
New IEAs (not InterPro2GO)
https://github.com/geneontology/helpdesk/issues/195
We decided earlier to not accept IEAs from outside groups, as all sequences would be run through the dependable InterPro2GO after uploading- but this group/method *seems* like they have more accurate annotations and higher coverage.
SynGO import
Long discussion last week - What's the next step ?
GPAD/GPI Specs
- We were going to set up a call - has it be scheduled?
- Chris was going to review current specs, particularly wrt SO/MSO
- Discuss expanding the gpi file to include other entities used in annotation, particularly the With/From field. e.g. variation IDs, RNAi experiment IDs, etc.
- This has come up in discussions with several curation groups, including MGI, WB, and Zfin
- How does the GO gpi file work fit in with Alliance data files?
- Not all GO contributors are part of the Alliance, but it would be nice to have standardized file formats for other entities.
New topics
BioLink availability: plan to durably solve those issues (last week we had timeout, this morning internal server error) ?