Manager Call 2020-02-12: Difference between revisions
No edit summary |
|||
(7 intermediate revisions by the same user not shown) | |||
Line 17: | Line 17: | ||
===GO meeting Baltimore, week of 5th Oct=== | ===GO meeting Baltimore, week of 5th Oct=== | ||
==Status of Projects== | |||
==Discussion== | |||
==Release delays == | |||
Is there anything we can do to help make releases easier ? | |||
==Status of 'high priority' Projects== | |||
Google spreadsheet of the projects: https://docs.google.com/spreadsheets/d/1lZO0cf64_eufimUhEdcpiZMGEmvF6_7BW-GQWBXR3Mw/edit#gid=199463565 | |||
* We need to know which of those projects are being worked on. | |||
* Also, are there other projects not in this list ? to be sure the priorities are aligned with the specification documents and vice versa. | |||
===AmiGO search fixes === | ===AmiGO search fixes === | ||
Not yet prioritized but the PIs asked to evaluate work to decide whether this will be prioritized | |||
Seth/Chris: evaluation of time - prioritization - resources | |||
===2.2 Aggregate Statistics for releases=== | |||
===2.3 Legacy infrastructure === | |||
===3.1 Migration of MGI and WormBase annotations to Noctua=== | |||
Week of Feb 24 hackaton will address that: | |||
Aims meeting: | |||
* The primary product of this meeting will be a gantt chart (see David’s from MGI’s perspective) that fully describes input and output switchover dependencies at the three sites (although not necessarily times, as some of this will be dictated by other resource limitations). The document will define future work on this project. | |||
* A secondary product will be to have a plan for annotation history. (TASK 4.5 in Priorities doc) | |||
* A secondary product will be to have a base validation format that is usable for both batch rules and minerva UI signals. (TASK #?? Priority? ) | |||
* A secondary product will be continued work on merging the GPAD codebase and RDF emitters into the ontobio library. (TASK #?? Priority? ) | |||
===4.1 GO-CAM ShEx specification v1.0 completion=== | |||
===4.2 Integrating validation (AKA GO rules) into Minerva=== | |||
===4.3 Noctua/GO-CAM Curator Documentation: curation philosophy=== | |||
* Done ? http://wiki.geneontology.org/index.php/Noctua | |||
* Do we want to review ? Paul for example ? | |||
* Should we link to this page from the Noctua form page ? | |||
===4.4: Documentation: curation how-to=== | |||
* which relations to choose when - this is the main thing curators ask about | |||
-> Kimberly in progress | |||
===4.8 Pathways2GO, including making models *activity-centric*=== | |||
===5.1 Deploy Noctua Search (as landing page)=== | |||
===5.3 Noctua onto "production" footing=== | |||
===8.7 Improve GO API & support the GO-CAM + documentation=== | |||
==Other discussion points== | |||
===Loading viral and bacterial entries in NEO=== | |||
https://github.com/geneontology/neo/issues/49 | |||
Prioritize + assign someone | |||
===Isoforms not loaded in AmiGO=== | |||
Was there a decision NOT to include UniProt isoforms in AmiGO ? | |||
https://github.com/geneontology/go-site/issues/1105 | |||
Also - should we provide single files for each organism, rather than splitting by entity type ? http://current.geneontology.org/products/pages/downloads.html | |||
Revision as of 11:59, 12 February 2020
Agenda
- Agenda: Suzi
- Minutes: Seth
- Present:
- Regrets:
Discussion points
Upcoming Meetings
Caltech f2f, 24-28 Feb
GO meeting Paris, 11 (Users), 12-14 (Main), 15(SAB) May
GO meeting Baltimore, week of 5th Oct
Discussion
Release delays
Is there anything we can do to help make releases easier ?
Status of 'high priority' Projects
Google spreadsheet of the projects: https://docs.google.com/spreadsheets/d/1lZO0cf64_eufimUhEdcpiZMGEmvF6_7BW-GQWBXR3Mw/edit#gid=199463565
- We need to know which of those projects are being worked on.
- Also, are there other projects not in this list ? to be sure the priorities are aligned with the specification documents and vice versa.
AmiGO search fixes
Not yet prioritized but the PIs asked to evaluate work to decide whether this will be prioritized Seth/Chris: evaluation of time - prioritization - resources
2.2 Aggregate Statistics for releases
2.3 Legacy infrastructure
3.1 Migration of MGI and WormBase annotations to Noctua
Week of Feb 24 hackaton will address that: Aims meeting:
- The primary product of this meeting will be a gantt chart (see David’s from MGI’s perspective) that fully describes input and output switchover dependencies at the three sites (although not necessarily times, as some of this will be dictated by other resource limitations). The document will define future work on this project.
- A secondary product will be to have a plan for annotation history. (TASK 4.5 in Priorities doc)
- A secondary product will be to have a base validation format that is usable for both batch rules and minerva UI signals. (TASK #?? Priority? )
- A secondary product will be continued work on merging the GPAD codebase and RDF emitters into the ontobio library. (TASK #?? Priority? )
4.1 GO-CAM ShEx specification v1.0 completion
4.2 Integrating validation (AKA GO rules) into Minerva
4.3 Noctua/GO-CAM Curator Documentation: curation philosophy
- Done ? http://wiki.geneontology.org/index.php/Noctua
- Do we want to review ? Paul for example ?
- Should we link to this page from the Noctua form page ?
4.4: Documentation: curation how-to
- which relations to choose when - this is the main thing curators ask about
-> Kimberly in progress
4.8 Pathways2GO, including making models *activity-centric*
5.1 Deploy Noctua Search (as landing page)
5.3 Noctua onto "production" footing
8.7 Improve GO API & support the GO-CAM + documentation
Other discussion points
Loading viral and bacterial entries in NEO
https://github.com/geneontology/neo/issues/49 Prioritize + assign someone
Isoforms not loaded in AmiGO
Was there a decision NOT to include UniProt isoforms in AmiGO ? https://github.com/geneontology/go-site/issues/1105
Also - should we provide single files for each organism, rather than splitting by entity type ? http://current.geneontology.org/products/pages/downloads.html