Manager Call 2020-04-08
Agenda
- Agenda: Seth
- Minutes: Pascale
- Present:
- Regrets:
Discussion points
MGI and WB Imports
Status updates
- WB
- Alex will work on preparing a test GPAD file with annotation history for WB - hopes to have it on the GOA ftp site soon
- MGI
- Have a periodic follow-up call to review progress?
- Sidenote: interest from XenBase, want to get Noctua annotations into AmiGO. Can we just fast track these through (directly load, not go back through XenBase)? No legacy history attached. https://github.com/geneontology/go-site/issues/1434.
Xenbase into GO main
- Malcolm already attends Judy's meeting, TO-DO: invite him (and/or xenbase reps) to GO-annotation calls. Need to make sure XB maintains own annotations, is in line with GO SOPs.
Pathway Genome Databases and the Alliance
See Chris' email
- Explore bringing in other existing curated pathways in a similar way that we did for Reactome
- Follow-up to Alliance call with Peter K. two weeks ago?
Users versus group-contacts.yaml
https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv https://github.com/geneontology/go-site/blob/master/metadata/groups.yaml
See discussion in https://github.com/geneontology/go-site/pull/1447
- `users` contain all users, including people not on the project anymore
- Not sure where affiliations come from for eg Cath Brooksbank listed as GO_central).
- `users` does not have GH handles
- `group-contacts` includes only active members
Publications
- Val's matrix paper is available as a draft
- Authors have reviewed and made comments
- Do the GO PIs (besides Chris who is last author) also need to read?