Manager Call 2020-04-29: Difference between revisions

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* The main aim is to test and get feedback on the guidelines we are writing up to match the new transcription factor branch of the ontolgy https://docs.google.com/document/d/1NwRfJQ5fQ7_BVpJG9eh-gKpgaTHoGHeq6XWOEoHdEGk/edit#
* The main aim is to test and get feedback on the guidelines we are writing up to match the new transcription factor branch of the ontolgy https://docs.google.com/document/d/1NwRfJQ5fQ7_BVpJG9eh-gKpgaTHoGHeq6XWOEoHdEGk/edit#
* Plan is to sent to biorxiv and publish in a special GREEKC issue of BBA that will probably be out probably in early 2021.
* Plan is to sent to biorxiv and publish in a special GREEKC issue of BBA that will probably be out probably in early 2021.
* '''Discussion'''
** Plan to run the workshop again with other groups.
** Kimberly: would be nice to also have GO-CAM models to show how to annotate transcription in GO-CAM


==Following up on previous items==
==Following up on previous items==

Revision as of 11:38, 29 April 2020

Agenda

  • Agenda: Kimberly
  • Minutes: Pascale
  • Present: Kimberly, Pascale, Suzi, Judy, Seth, David, Huaiyu, Chris
  • Regrets:


Review May Consortium Meeting agenda

  • We are within a month of the May consortium meetings
  • Need to start firming up the agenda so people can start planning their schedules and working on presentations


  • Registration is closed !! Need Laurent-Philippe (or someone else) to reopen it.

Transcription workshop this week

3-days workshop ran by Ruth and Pascale Attendees: Colin, Astrid, Kimberly, and curators:

  • Valerie Wood
  • Helen Attrill
  • Cristina Casals (Swiss-Prot)
  • Penelope Garmiri (UniProt)
  • Michele Magrane (UniProt)
  • Teshome Dagne Mulugeta (NTNU)
  • Dariia Bykova
  • Sandra Orchard
  • Paul Denny (UniProt)
  • Niels Velthuijs (Colin's group)
  • Birgit Meldal (only Wed PM)
  • Discussion
    • Plan to run the workshop again with other groups.
    • Kimberly: would be nice to also have GO-CAM models to show how to annotate transcription in GO-CAM

Following up on previous items

Noctua

ACTION ITEM: : Consider starting a working group to discuss external ontologies in Noctua and GO more generally with the goal of developing consistent representation (as much as possible) and an SOP to give to groups onboarding. Will discuss further on the GO-CAM specs call, particularly with Jim B.


GAF2.2

What's the next step - create a project ?


XenBase onboarding status

Seth - update

ECO and IEAs

  • Many Evidence codes do not match to the 3-letter evidence codes that we would map to
  • ACTION: Pascale to contact Michelle to set up some virtual meeting to discuss some issues we'd like to see fixed