Manager Call 2020-05-27: Difference between revisions

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==SARSCoV2 status==
==SARSCoV2 status==
Patrick says the entries are still not loaded - what is blocking ?
Patrick says the entries are still not loaded - what is blocking ?
=== Discussion ===


Chris: GPI is still problematic--duplicate entries. Maybe just PRO? But then data flow hard. And on and on, still not resolved. NEO load. Just picking one should be fine. <br />
Chris: GPI is still problematic--duplicate entries. Maybe just PRO? But then data flow hard. And on and on, still not resolved. NEO load. Just picking one should be fine. <br />

Revision as of 11:54, 27 May 2020

Agenda

  • Agenda: Suzi
  • Minutes: Seth
  • Present: David, Kimberly, Huaiyu, Suzi, Laurent, Judy, Chris, Pascale, PaulT, Suzi, Seth
  • Regrets:


SARSCoV2 status

Patrick says the entries are still not loaded - what is blocking ?

Discussion

Chris: GPI is still problematic--duplicate entries. Maybe just PRO? But then data flow hard. And on and on, still not resolved. NEO load. Just picking one should be fine.
Chris: let’s make a decision about the duplicates here today.
Pascale: This is PI-level
David: PRO is used by Reactome and MGI
Judy: Let’s push on using PRO IDs
Pascale: Just tell Patrick to annotate to PRO?
PaulT: Just ask them for the level of granularity--technically doesn’t have to be PRO. Can’t be mandated, but… Talk to Alex/Alan.
Chris: For the directors call then.


Load the 142 Panther species in NEO and AmiGO

(Pascale)

https://github.com/geneontology/pipeline/issues/178

  • Discussion from the multiorg group.
  • We had proposed loading all reviewed entries for bacteria and viruses, see https://github.com/geneontology/neo/issues/49, but the 35 bacterial species (+ their substrains) are probably sufficient for the needs of bacterial annotation.
  • Other species could be added if needed, to be discussed for each species and also with Panther.


ECO

  • To decide whether we need to hold a meeting with Michelle, and how soon that will be, we need to know
    • Are we using ECO anywhere ? For example it shows up in AmiGO
    • How do we WANT to use it ? Do we want to allow the full ECO, a subset, or just the current 3-letter ones ?