Manager Call 2020-05-27: Difference between revisions

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==Load the 142 Panther species in NEO and AmiGO==
==Load the 142 Panther species in NEO and AmiGO==
(Pascale)  
(Pascale)  
https://github.com/geneontology/pipeline/issues/178
* Discussion from the multiorg group.
* Discussion from the multiorg group.
* We had proposed loading all reviewed entries for bacteria and viruses, see https://github.com/geneontology/neo/issues/49, but the 35 bacterial species (+ their substrains) are probably sufficient for the needs of bacterial annotation.  
* We had proposed loading all reviewed entries for bacteria and viruses, see https://github.com/geneontology/neo/issues/49, but the 35 bacterial species (+ their substrains) are probably sufficient for the needs of bacterial annotation.  

Revision as of 11:00, 27 May 2020

Agenda

  • Agenda: Suzi
  • Minutes: Seth
  • Present:
  • Regrets:


SARSCoV2 status

Patrick says the entries are still not loaded - what is blocking ?

Load the 142 Panther species in NEO and AmiGO

(Pascale)

https://github.com/geneontology/pipeline/issues/178

  • Discussion from the multiorg group.
  • We had proposed loading all reviewed entries for bacteria and viruses, see https://github.com/geneontology/neo/issues/49, but the 35 bacterial species (+ their substrains) are probably sufficient for the needs of bacterial annotation.
  • Other species could be added if needed, to be discussed for each species and also with Panther.


ECO

  • To decide whether we need to hold a meeting with Michelle, and how soon that will be, we need to know
    • Are we using ECO anywhere ? For example it shows up in AmiGO
    • How do we WANT to use it ? Do we want to allow the full ECO, a subset, or just the current 3-letter ones ?