Manager Call 2020-08-12

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Revision as of 23:16, 11 August 2020 by Lpalbou (talk | contribs) (GO Baltimore)

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Agenda

  • Agenda: David
  • Minutes:
  • Present:

Long term release for GO and Panther ?

Huaiyu got feedback from users they would want to be able to reproduce their results either for double checking or for an article review. To some extent, for some users/usages it's possible GO is evolving too fast. This is linked to our discussions with Versioned Enrichment and there are multiple ways to solve it, eg:

  • have a long term release (LTR, frequent in software dev) updated maybe only every 6 or 12 months. This would be in parallel of the monthly release so a user could access both but the LTR would be more stable for citation/reproducibility over longer period of time
  • always keep online the last 2-3 versions of the release, so a user could refer to it (not the most cost efficient but easy to achieve)
  • have a system to automatically spin up any version of GO + Panther on demand. Possible, could be cost efficient (eg accumulate batch over the day and launch them over a time over a small period of time), but would require some devs


GO Baltimore

Basic page created with google doc to start filling agenda: http://wiki.geneontology.org/index.php/October_2020_Remote_GOC_Meeting_Logistics

User meeting, 3 half days

From last meeting, users preference were:

- enrichment analysis

- data access and integration

- hands-on, jupyter notebooks

- ontology

- curation

If it is up to a general audience, then we can customize it however we want. What do we want to communicate to a broader audience? Laurent-Philippe will contact Michelle.

GO-CAM Jamboree

  • Proposal to have a GO-CAM curation jamboree sometime this fall
  • How critical will it be to have Noctua on a more secure production footing by this time?

Not sure yet before or after GO meeting. Possible concern with the fire season.

Name: GO-CAMboree ?

GPAD/GPI

There have been a few meetings about GPI content since last week


Legacy data

Moving groups to Noctua (#3)

Kimberly has a GPAD file with full history and looking into loading this David/Lori have posted the mgi GPI 2.0 file on our test site for the GOC group to pick up.

ART

Specs here to discuss: https://docs.google.com/document/d/1iaqE1xEhvgT0OxfF8YUN36Gii962mQQ-ouTlP8OppGM/edit#heading=h.gx5r3bwu5gee Converging on something stable with general approval

GO pipeline solidified / Infrastructure / DevOps (#4)

Discussion on taxon constraints ? Anything else to report ?

Jim has created a plugin for Protege that allows editors to see the inferred taxon constraints.

GO release

Some issues:

GO-CAM Jamboree