Revision as of 14:01, 15 September 2020

Agenda

When do we want to make an announcement to the user community?
- This seems dependent upon a firm date for switchover - do we have that?
- We should also supply a test file for developers and include its location in the announcement.
- MGI and WB are nearly (if not already) ready for this, but we need to assess where other groups are at

Noctua Imports (#3a)
- MGI/wormbase imports
- GPAD/GPI 2.0
- Minerva/gpad output
  - I think we need to schedule a virtual working meeting to focus on the GO-CAM GPAD output. Propose that David and I create an agenda so we can determine who needs to be at the meeting, what specific work needs to get done, and then find a good time for everyone. (Kimberly)
Legacy data (#6)

Pascale, Laurent-Philippe

1. gp2protein, gp2RNA files, gpi files: Any preferences for keeping/dropping them ?
- gp2protein, gp2RNA: https://github.com/geneontology/archive-reconstruction/issues/3
- gpi: https://github.com/geneontology/archive-reconstruction/issues/2
2. File names: what about users citing old filenames ? see https://github.com/geneontology/archive-reconstruction/issues/1#issuecomment-680121448
3. Folder structure: can we avoid repetition in folder names ? see https://github.com/geneontology/archive-reconstruction/issues/1#issuecomment-680122454 . How do we plan for future changes ? For instance if annotation files are created for species rather than groups (this would also be a breaking change for Zenodo).
4. File browser: use the AWS S3 of the archive (https://geneontology-tmp.s3.amazonaws.com/index.html) for both current & release.geneontology.org ?
5. Do we store this archive only on release.geneontology.org or do we store it also on Zenodo *now* ? Pros: Zenodo is here for "always" and free, AWS S3 could be turned off (eg if cost not paid); Cons: everything in Zenodo would have a DOI and it could easily discourage any changes to the archive folder hierarchy / file names (situation we are in)
Noctua (#3e)
- ui implementations
  - bug fixes
  - ART