Managers 10Mar10: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 5: Line 5:
Minutes: Kara
Minutes: Kara


Phone passCode: 601425#
Phone passCode: 801-561
 


==Action items from previous calls ==
==Action items from previous calls ==

Revision as of 12:10, 10 March 2010

Participants:

Agenda: David

Minutes: Kara

Phone passCode: 801-561


Action items from previous calls

  • All managers: Prepare materials for SAB
    • Funded deliverables can be found in the agenda of the GOC meeting in Cambridge 2009
    • 4-10 slides describing our goals and accomplishments

Discussion items

  • Brief report on the Chemical workshop that we held at the EBI last week (David, Jane, Midori, Tanya)
  • I forwarded an email from Vinod Scaria from the Mycobacterium tuberculosis annotation project. I think he has been in touch with Michelle et al (someone needs to check), but who is responsible for following up on these sorts of issues now?
  • What is the hiring procedure for the new person at the EBI?
  • The upcoming GOC meeting:
    • Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these
      • Cross-product / logical definitions update, go/chebi xps (15)
      • GO-pathway database integration (15)
      • GAF inference and Evidence codes for automated inference (5-10)
      • Proposal for more streamlined addition of compositional terms (5)
      • GAF2 update (5-10)
      • Tighter obo-edit/protege/owl integration in CL and GO (5)
      • AmiGO new features
        • New search features in AmiGO (5)
        • PAINT-style displays in AmiGO (5)
        • Improved tree view (5)
    • Wish list for discussion items at the meeting
      • linkages between GO complex and PRO classes
      • signaling

Funded Deliverables

  • Aim 1: We will maintain comprehensive, logically rigorous and biologically accurate ontologies
Year Task Status
1 Completing is_a relations Done
1 Completing part_of relations Done
3 Substitution of regulates relationships Done
3 Produce slim versions excluding specified relationship classes Done?
1 Parse implicit Cell terms from GO and resolve Parse done, waiting on cell ontology
2 Parse implicit Chemical terms from GO and resolve Parse done, alignment in progress
5 Parse implicit Anatomical terms from GO and resolve Parse done, alignment in progress
2 OBO-Edit that enables cross-links Done
3 AmiGO that supports cross-links
5 Automate inconsistency checking Done, ongoing
3 Inclusion of specialized part_of & contained_in relationships in CC Still to do
3 Inclusion of located_in & has_part relationships in BP has_part-done and ongoing. located_in-still to do
1 Programmable access to retrieve annotations Done
5 Add relationships between BP, MF, and CC Done, ongoing
5 Develop tools and protocols to maintain pathways congruency In Progress
3 OBO-Edit support for tracking changes to the ontology Done
5 OBO-Edit interoperability support Done?
5 Implementation of faster querying techniques In progress

Reference genome report

Back to minutes list