Difference between revisions of "Managers 16Jan08"

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=== Outreach/User Advocacy===  
 
=== Outreach/User Advocacy===  
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Jen
 
==== Avian annotation workshop====
 
==== Avian annotation workshop====
 
Fiona McCarthy is organizing an Avian annotation workshop (Miss. St University)
 
Fiona McCarthy is organizing an Avian annotation workshop (Miss. St University)
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===  Software===  
 
===  Software===  
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Chris
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* Set up an instance of AmiGO at Berkeley running with all the IEAs to test what problems are in moving on with this
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* Annotation cross products: extra column in annotation file: Evelyn sent some examples
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(see wiki)
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Revision as of 08:48, 16 January 2008

GO Managers, Weds. Jan. 16, 2008 8a.m. PST, 9a.m. MST, 10a.m. CST, 11a.m. EST, 4p.m. GMT

Agenda/chair: Midori

Minutes: Pascale

Present: Midori, Pascale, Jen, Midori, Chris, Suzi, Judy, Michael

Review Action Items from previous meeting

  1. All: review document on regulation wiki page
  2. Chris: Draft proposal for GO slim maintenance. [in progress will send email to managers with the different options by the next meeting]
  3. Pascale, Jim et al.: Continue discussing wiki-based annotation tool.
  4. Jen: Organize conf call on gohelp technology. [Done; problem went away magically]
  5. Pascale (and rest of annotators): Continue improving annotation SOPs.
  6. Judy: Contact sea urchin db about doing GO annotation.
  7. See if we can collaborate with journals to obtain annotations from users. Responsible groups: managers, software group and annotators?: Test various methods of accepting user submissions for annotation; converge on best solution, and seek journal buy-in.
  8. Tanya and managers: Schedule Webex/call for Tanya to present her annotation-acquisition talk.
  9. Midori: Follow up on fungal terms with Val and Maria for sensu work: [Done]

Individual Manager reports

Ontology Development

Regulation

many relationship fixes; ready to deploy 'regulates' relationship; draft announcement email on wiki: http://gocwiki.geneontology.org/index.php/Meeting_Minutes_3:Stanford

  • Chris: summary of achievements: repositioned many of the is_a relationships so that they are more accurate, ie structure of the graph is improved. This allows better statistical analyses using the GO. Would be nice to quantify this, for example by taking papers that used GO and repeat analyses and see if results are better. Added >900 relationships.
  • See wiki for all details

In progress

Transport, electron transport

Next priorities

Function- process links?


Outreach/User Advocacy

Jen

Avian annotation workshop

Fiona McCarthy is organizing an Avian annotation workshop (Miss. St University)

ISAFG

Fiona is giving a GO tutorial at the ISAFG - European Farm animal conference


Software

Chris

  • Set up an instance of AmiGO at Berkeley running with all the IEAs to test what problems are in moving on with this
  • Annotation cross products: extra column in annotation file: Evelyn sent some examples

(see wiki)



Reference Genomes


Meetings


Collaborations and Interactions, active and new

  1. Report from Larry Hunter on Jan 11th meeting re NLP & ontology QA

Operations and Procedures


Staffing and Personnel


Budget issues


Publications


Other Current Topics and Concerns

Back to minutes list