Managers 24Mar10: Difference between revisions
Karadolinski (talk | contribs) |
Karadolinski (talk | contribs) No edit summary |
||
| Line 30: | Line 30: | ||
==Judy's Draft Agenda== | ==Judy's Draft Agenda== | ||
March 30 – Morning - Break | |||
1. Review Agenda | 1. Review Agenda | ||
| Line 37: | Line 37: | ||
........includes Evidence codes from PAINT and Inferences from MF-BP links | ........includes Evidence codes from PAINT and Inferences from MF-BP links | ||
March 30 – Morning Break – Lunch | |||
Regulation links/Cross-products: what they are and how they impact annotation (David or Tanya or Jane or Chris) | Regulation links/Cross-products: what they are and how they impact annotation (David or Tanya or Jane or Chris) | ||
Discussion to resolve annotation questions and concerns | Discussion to resolve annotation questions and concerns | ||
March 30 Afternoon - Break | |||
File Management Issues | File Management Issues | ||
| Line 50: | Line 50: | ||
d. Mechanics of file dissemination. | d. Mechanics of file dissemination. | ||
March 30 Afternoon break – Dinner | |||
OBO-Foundry Report (Jane) | OBO-Foundry Report (Jane) | ||
| Line 57: | Line 57: | ||
Update on Cell Type Ontology (Terry) | Update on Cell Type Ontology (Terry) | ||
March 31 Morning – Break | |||
Any lingering concerns about ontology development vs annotation | Any lingering concerns about ontology development vs annotation | ||
| Line 63: | Line 63: | ||
OBO_EDIT updates/report (Amina?) | OBO_EDIT updates/report (Amina?) | ||
March 31 Morning Break – Lunch | |||
Guidelines for ‘binding’ terms. | Guidelines for ‘binding’ terms. | ||
Other Annotation Issues | Other Annotation Issues | ||
March 31 Afternoon | |||
Open for further discussion | Open for further discussion | ||
Open forum on thoughts regarding upcoming competitive renewal applications | Open forum on thoughts regarding upcoming competitive renewal applications | ||
New items | |||
- Rama in contact with the M.tuberculosis community annotation group. Awaiting their annotation file to evaluate | - Rama in contact with the M.tuberculosis community annotation group. Awaiting their annotation file to evaluate | ||
Revision as of 11:15, 24 March 2010
Participants:
Agenda: Kara
Minutes: Emily
Phone passCode: 801-561
Action items from previous calls
- All managers: Prepare materials for SAB, see past notes at Managers_10Mar10.
- The upcoming GOC meeting:
- Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these. We should be sure to see which topics that people who phone into the meeting are most interested in so we can plan the agenda accordingly.
- Cross-product / logical definitions update, go/chebi xps (15 - David says longer)
- GO-pathway database integration (15 - Chris, Harold)
- Evidence codes for MF-BP inferences (5-10 - Chris, David, Rama)
- Annotation method column in GAF (Rama/Chris)
- Proposal for more streamlined addition of compositional terms (5)
- GAF2 update (5-10) CJM
- Tighter obo-edit/protege/owl integration in CL and GO (5)
- AmiGO new features
- New search features in AmiGO (5)
- PAINT-style displays in AmiGO (5)
- Improved tree view (5)
- Wish list for discussion items at the meeting
- linkages between GO complex and PRO classes
- signaling
- Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these. We should be sure to see which topics that people who phone into the meeting are most interested in so we can plan the agenda accordingly.
Judy's Draft Agenda
March 30 – Morning - Break
1. Review Agenda 2. MF-BP links, what they are and how they impact annotation (David Hill) 3. Discussion to resolve annotation questions and concerns ........includes Evidence codes from PAINT and Inferences from MF-BP links
March 30 – Morning Break – Lunch
Regulation links/Cross-products: what they are and how they impact annotation (David or Tanya or Jane or Chris) Discussion to resolve annotation questions and concerns
March 30 Afternoon - Break
File Management Issues a. Taxon IDs b. Making ext GO ‘main’ c. new column in GAF-Annotation Method d. Mechanics of file dissemination.
March 30 Afternoon break – Dinner
OBO-Foundry Report (Jane) Ontology Content Additions Aligning chemicals Update on Cell Type Ontology (Terry)
March 31 Morning – Break
Any lingering concerns about ontology development vs annotation AMIGO updates/report (Seth?) OBO_EDIT updates/report (Amina?)
March 31 Morning Break – Lunch
Guidelines for ‘binding’ terms. Other Annotation Issues
March 31 Afternoon
Open for further discussion Open forum on thoughts regarding upcoming competitive renewal applications
New items
- Rama in contact with the M.tuberculosis community annotation group. Awaiting their annotation file to evaluate
- Should Rama and Emily look into generating guidelines for future GO jamboree efforts, to ensure quality of data? Should such annotations *always* be included in the main GO ftp site? (Emily & Rama)
- GO Consortium Agenda items: should there be discussions on column 16? Could we have an update from PAINT? (Emily & Rama)
- possibility of collaborations with the IMEx Consortium (Emily)