Difference between revisions of "Managers 24Mar10"

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(Action items from previous calls)
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==Judy's Draft Agenda==
 
==Judy's Draft Agenda==
  
==March 30 – Morning - Break==
+
March 30 – Morning - Break
  
 
1.  Review Agenda
 
1.  Review Agenda
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........includes Evidence codes from PAINT and Inferences from MF-BP links
 
........includes Evidence codes from PAINT and Inferences from MF-BP links
  
==March 30 – Morning Break – Lunch==
+
March 30 – Morning Break – Lunch
  
 
Regulation links/Cross-products:  what they are and how they impact annotation (David or Tanya or Jane or Chris)
 
Regulation links/Cross-products:  what they are and how they impact annotation (David or Tanya or Jane or Chris)
 
Discussion to resolve annotation questions and concerns
 
Discussion to resolve annotation questions and concerns
  
==March 30 Afternoon - Break==
+
March 30 Afternoon - Break
  
 
File Management Issues
 
File Management Issues
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d.  Mechanics of file dissemination.
 
d.  Mechanics of file dissemination.
  
==March 30 Afternoon break – Dinner==
+
March 30 Afternoon break – Dinner
  
 
OBO-Foundry Report (Jane)
 
OBO-Foundry Report (Jane)
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Update on Cell Type Ontology (Terry)
 
Update on Cell Type Ontology (Terry)
  
==March 31 Morning – Break==
+
March 31 Morning – Break
  
 
Any lingering concerns about ontology development vs annotation
 
Any lingering concerns about ontology development vs annotation
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OBO_EDIT updates/report (Amina?)
 
OBO_EDIT updates/report (Amina?)
  
==March 31 Morning Break – Lunch==
+
March 31 Morning Break – Lunch
  
 
Guidelines for ‘binding’ terms.
 
Guidelines for ‘binding’ terms.
 
Other Annotation Issues  
 
Other Annotation Issues  
  
==March 31 Afternoon==
+
March 31 Afternoon
  
 
Open for further discussion
 
Open for further discussion
 
Open forum on thoughts regarding upcoming competitive renewal applications
 
Open forum on thoughts regarding upcoming competitive renewal applications
  
==New items==
+
New items
  
 
- Rama in contact with the M.tuberculosis community annotation group. Awaiting their annotation file to evaluate
 
- Rama in contact with the M.tuberculosis community annotation group. Awaiting their annotation file to evaluate

Revision as of 07:15, 24 March 2010

Participants:

Agenda: Kara

Minutes: Emily

Phone passCode: 801-561


Action items from previous calls

  • The upcoming GOC meeting:
    • Prioritization of some things Chris would like to discuss/present at the GO meeting. Including estimates for ideal length of time, but we can discuss these. We should be sure to see which topics that people who phone into the meeting are most interested in so we can plan the agenda accordingly.
      • Cross-product / logical definitions update, go/chebi xps (15 - David says longer)
      • GO-pathway database integration (15 - Chris, Harold)
      • Evidence codes for MF-BP inferences (5-10 - Chris, David, Rama)
      • Annotation method column in GAF (Rama/Chris)
      • Proposal for more streamlined addition of compositional terms (5)
      • GAF2 update (5-10) CJM
      • Tighter obo-edit/protege/owl integration in CL and GO (5)
      • AmiGO new features
        • New search features in AmiGO (5)
        • PAINT-style displays in AmiGO (5)
        • Improved tree view (5)
    • Wish list for discussion items at the meeting
      • linkages between GO complex and PRO classes
      • signaling

Judy's Draft Agenda

March 30 – Morning - Break

1. Review Agenda 2. MF-BP links, what they are and how they impact annotation (David Hill) 3. Discussion to resolve annotation questions and concerns ........includes Evidence codes from PAINT and Inferences from MF-BP links

March 30 – Morning Break – Lunch

Regulation links/Cross-products: what they are and how they impact annotation (David or Tanya or Jane or Chris) Discussion to resolve annotation questions and concerns

March 30 Afternoon - Break

File Management Issues a. Taxon IDs b. Making ext GO ‘main’ c. new column in GAF-Annotation Method d. Mechanics of file dissemination.

March 30 Afternoon break – Dinner

OBO-Foundry Report (Jane) Ontology Content Additions Aligning chemicals Update on Cell Type Ontology (Terry)

March 31 Morning – Break

Any lingering concerns about ontology development vs annotation AMIGO updates/report (Seth?) OBO_EDIT updates/report (Amina?)

March 31 Morning Break – Lunch

Guidelines for ‘binding’ terms. Other Annotation Issues

March 31 Afternoon

Open for further discussion Open forum on thoughts regarding upcoming competitive renewal applications

New items

- Rama in contact with the M.tuberculosis community annotation group. Awaiting their annotation file to evaluate

- Should Rama and Emily look into generating guidelines for future GO jamboree efforts, to ensure quality of data? Should such annotations *always* be included in the main GO ftp site? (Emily & Rama)

- GO Consortium Agenda items: should there be discussions on column 16? Could we have an update from PAINT? (Emily & Rama)

- possibility of collaborations with the IMEx Consortium (Emily)