May2008 ontology report
Jump to navigation
Jump to search
Ontology Development & GO Editorial Office Report - March 2008
I. Ontology Development
- SourceForge
- Items opened: 83
- Items closed: 118
- GO Eds: 53
- MOD curators: 25 (details in Appendix 1)
- GO Ed/MOD collaborations: 40 (details in Appendix 2)
- Items still open: 257
- assigned, GO Eds: 68
- assigned, MOD curators: 108
- unassigned: 81
- Content items resolved
- Several SourceForge items resolved
- Content items in progress
- Follow-up to 'regulates' work continues, as noted in March.
- Regulates relationships for multi-organism processes (Jane)
- Taxon links
- Techincal work (OBO-Edit, scripts, etc) in progress (Jen, Chris)
- Determining links relevant to Drosophila (Jen, Susan, Becky)
- Function-process links for electron transport still being collected
- Signal transduction overhaul continuing (Jen, David)
- Additional transport work continuing; new expert participant: Dr Paul Dobson, Manchester Interdisciplinary Biocentre
- Various SourceForge items
- Follow-up to 'regulates' work continues, as noted in March.
- IMG mapping update in progress (Jane)
- Ontology QC wiki page now available
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Amelia at Berkeley
- OBO-Edit working group:
- Amina has arrived
- More bug testing and documentation for OBO-Edit 2.0
- Jen's GUI for obomerge now ready for testing
- Jen now working on improving GraphViz viewer configurability
- Advocacy/outreach
- AmiGO working group planning for AmiGO 1.6
- May newsletter
- Tool for GO Tools web page (Amelia & Jane)
- Publications
- Erika and Jen have received reviews on the muscle content meeting paper, and are preparing responses and a revised manuscript
- Meetings
- ChEBI workshop (Jane)
- Another round of training at RSC (Jane, Jen)
- Anything else
- GO bibliography has 1968 entries
Appendix 1: MOD curators' SF items 1979329 Tanya, David 1958941 Tanya, David 1954197 Tanya, David 1524725 Donghui, Candace 1951771 Tanya, David 1909678 David H, David OS, Susan 1187385 David, Karen P 1970026 Donghui, Tanya 1970004 Donghui 1969977 Donghui 1970020 Donghui 1969792 Donghui 1969962 Donghui 1969980 Donghui 1969212 Donghui 1969219 Donghui 1969197 Donghui 1965314 David, Chris 1945277 David, Tanya 1354493 David, Russ, Doug 1616399 David, Tanya 1664904 Tanya, David 1917311 David 1954489 Tanya, David 1906309 Karen C, Val Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 1644873 Donghui 1568109 Donghui 1969138 Rama, Julie 1940614 Karen C 1610521 David 1683673 Harold, Kimberly, Eurie 1834028 Tanya, Val 1627238 David 1741534 Alex, PAMGO curators 1968766 Val 1671065 Matt B, David 1854029 Ruth, Peter, expert Philippa Talmud 1634430 David, Petra 862210 David 1960729 Chris, Peter 1548649 Alex, Val 1701499 Val, Harold, David, Tanya 1658374 meeting discussion 1650683 Rachael, Karen C, Alex 1587313 Karen C; meeting discussion 1566303 Karen C, Val 1565692 David 1494548 meeting discussion 1494526 Alex, Michelle, Chris, Erika; meeting discussion 903822 Karen C, Tanya 1251273 Alex, Peter 1863428 Peter 1033441 Alex 1892864 Tanya, David 1949239 David, Tanya, Val 1954235 Chris, SGD curators 1886634 Karen C, Harold 1930696 Karen C 1931407 Michelle, Val 1688647 Donghui 1370222 Alex 1744740 Peter 1954259 Peter 1940617 Karen C 1760944 Karen C, Harold (Note: "MOD curator" is shorthand for any non-GO-Ed curator)