Mining Process Function Links
The column headings (line 1) are:
- process_function_prob process function genesInBoth genesWithFunc genesWithProc probProcessGivenFunction probFunctionGivenProcess
The list shows various P and F pairs, and for each pair calculates statistics:
genesWithFunc = total genes annotated to F genesWithProc = total genes annotated to P
(IEAs excluded)
genesInBoth = total genes annotated to BOTH P and F.
probProcessGivenFunction = p(P | F) probFunctionGivenProcess = p(F | P)
if p(P | F) is high and we have a statistically significant sample size, then there is support for a F part_of P link
if p(F | P) is high and we have a statistically significant sample size, then there is support for a P has_part F link
process | function | genesInBoth | genesWithFunc | genesWithProc | probProcessGivenFunction | probFunctionGivenProcess |
GO:0009767-photosynthetic electron transport chain | GO:0005375-copper ion transmembrane transporter activity | 1 | 76 | 128 | 0.0132 | 0.0078 |
GO:0009767-photosynthetic electron transport chain | GO:0005507-copper ion binding | 1 | 293 | 128 | 0.0034 | 0.0078 |
GO:0009767-photosynthetic electron transport chain | GO:0015662-ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 1 | 350 | 128 | 0.0029 | 0.0078 |
GO:0009772-photosynthetic electron transport in photosystem II | GO:0003959-NADPH dehydrogenase activity | 1 | 22 | 4 | 0.0455 | 0.2500 |
GO:0009772-photosynthetic electron transport in photosystem II | GO:0045157-electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 1 | 2 | 4 | 0.5000 | 0.2500 |
GO:0009772-photosynthetic electron transport in photosystem II | GO:0046428-1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 1 | 2 | 4 | 0.5000 | 0.2500 |
GO:0009773-photosynthetic electron transport in photosystem I | GO:0003677-DNA binding | 1 | 9893 | 7 | 0.0001 | 0.1429 |
GO:0009773-photosynthetic electron transport in photosystem I | GO:0005516-calmodulin binding | 1 | 373 | 7 | 0.0027 | 0.1429 |
GO:0009773-photosynthetic electron transport in photosystem I | GO:0009055-electron carrier activity | 1 | 1152 | 7 | 0.0009 | 0.1429 |
GO:0009775-photosynthetic electron transport in cytochrome b6/f | GO:0045158-electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 2 | 2 | 5 | 1.0000 | 0.4000 |
GO:0009775-photosynthetic electron transport in cytochrome b6/f | GO:0046028-electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1 | 1 | 5 | 1.0000 | 0.2000 |
GO:0010205-photoinhibition | GO:0004176-ATP-dependent peptidase activity | 1 | 56 | 7 | 0.0179 | 0.1429 |
GO:0010205-photoinhibition | GO:0004722-protein serine/threonine phosphatase activity | 1 | 417 | 7 | 0.0024 | 0.1429 |
GO:0010205-photoinhibition | GO:0005198-structural molecule activity | 1 | 4123 | 7 | 0.0002 | 0.1429 |
GO:0010205-photoinhibition | GO:0008237-metallopeptidase activity | 1 | 481 | 7 | 0.0021 | 0.1429 |
GO:0010205-photoinhibition | GO:0008266-poly(U) binding | 2 | 33 | 7 | 0.0606 | 0.2857 |
GO:0010205-photoinhibition | GO:0008270-zinc ion binding | 1 | 1396 | 7 | 0.0007 | 0.1429 |
GO:0010205-photoinhibition | GO:0009979-16:0 monogalactosyldiacylglycerol desaturase activity | 1 | 1 | 7 | 1.0000 | 0.1429 |
GO:0010205-photoinhibition | GO:0010242-oxygen evolving activity | 2 | 2 | 7 | 1.0000 | 0.2857 |
GO:0010205-photoinhibition | GO:0016887-ATPase activity | 1 | 4197 | 7 | 0.0002 | 0.1429 |
GO:0010205-photoinhibition | GO:0045485-omega-6 fatty acid desaturase activity | 1 | 2 | 7 | 0.5000 | 0.1429 |
GO:0019684-photosynthesis, light reaction | GO:0008266-poly(U) binding | 3 | 33 | 262 | 0.0909 | 0.0115 |
GO:0019684-photosynthesis, light reaction | GO:0008839-dihydrodipicolinate reductase activity | 1 | 22 | 262 | 0.0455 | 0.0038 |
GO:0019684-photosynthesis, light reaction | GO:0010242-oxygen evolving activity | 2 | 2 | 262 | 1.0000 | 0.0076 |
GO:0019684-photosynthesis, light reaction | GO:0016168-chlorophyll binding | 11 | 33 | 262 | 0.3333 | 0.0420 |
GO:0019684-photosynthesis, light reaction | GO:0020037-heme binding | 2 | 208 | 262 | 0.0096 | 0.0076 |
GO:0019684-photosynthesis, light reaction | GO:0030385-ferredoxin:thioredoxin reductase activity | 2 | 4 | 262 | 0.5000 | 0.0076 |