Mining Process Function Links from Cyc

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Revision as of 17:48, 13 October 2008 by Cjm (talk | contribs) (Files)

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Methods

I used the Cyc biopax exports. I took a connection between a biopax pathway and a reaction with corresponding GO xrefs to be evidence of a potential P->F link

Files

Note that the relations here should really be sometimes_has_part

Table

This example table is from humancyc

GO:0005978 glycogen biosynthetic process GO:0003844 1,4-alpha-glucan branching enzyme activity pathway42791
GO:0005978 glycogen biosynthetic process GO:0008878 glucose-1-phosphate adenylyltransferase activity pathway42791
GO:0005978 glycogen biosynthetic process GO:0009011 starch synthase activity pathway42791
GO:0005980 glycogen catabolic process GO:0004340 glucokinase activity pathway42886
GO:0005980 glycogen catabolic process GO:0004614 phosphoglucomutase activity pathway42886
GO:0005980 glycogen catabolic process GO:0008184 glycogen phosphorylase activity pathway42886
GO:0006011 UDP-glucose metabolic process GO:0003978 UDP-glucose 4-epimerase activity pathway42874
GO:0006011 UDP-glucose metabolic process GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity pathway42874
GO:0006011 UDP-glucose metabolic process GO:0004427 inorganic diphosphatase activity pathway42874
GO:0006011 UDP-glucose metabolic process GO:0004614 phosphoglucomutase activity pathway42874
GO:0006012 galactose metabolic process GO:0003978 UDP-glucose 4-epimerase activity pathway42880
GO:0006012 galactose metabolic process GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity pathway42880
GO:0006012 galactose metabolic process GO:0004335 galactokinase activity pathway42880
GO:0006012 galactose metabolic process GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity pathway42880
GO:0006013 mannose metabolic process GO:0004476 mannose-6-phosphate isomerase activity pathway42765
GO:0006013 mannose metabolic process GO:0004615 phosphomannomutase activity pathway42765
GO:0006013 mannose metabolic process GO:0008928 mannose-1-phosphate guanylyltransferase (GDP) activity pathway42765
GO:0006013 mannose metabolic process GO:0019158 mannokinase activity pathway42765
GO:0006043 glucosamine catabolic process GO:0004342 glucosamine-6-phosphate deaminase activity pathway41954
GO:0006043 glucosamine catabolic process GO:0008448 N-acetylglucosamine-6-phosphate deacetylase activity pathway41954
GO:0006065 UDP-glucuronate biosynthetic process GO:0047350 glucuronate-1-phosphate uridylyltransferase activity pathway42857
GO:0006065 UDP-glucuronate biosynthetic process GO:0047940 glucuronokinase activity pathway42857
GO:0006065 UDP-glucuronate biosynthetic process GO:0050113 inositol oxygenase activity pathway42857
GO:0006085 acetyl-CoA biosynthetic process GO:0003878 ATP citrate synthase activity pathway41237
GO:0006094 gluconeogenesis GO:0004332 fructose-bisphosphate aldolase activity pathway42895
GO:0006094 gluconeogenesis GO:0004347 glucose-6-phosphate isomerase activity pathway42895
GO:0006094 gluconeogenesis GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity pathway42895
GO:0006094 gluconeogenesis GO:0004473 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity pathway42895
GO:0006094 gluconeogenesis GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity pathway42895
GO:0006094 gluconeogenesis GO:0004618 phosphoglycerate kinase activity pathway42895
GO:0006094 gluconeogenesis GO:0004619 phosphoglycerate mutase activity pathway42895
GO:0006094 gluconeogenesis GO:0004634 phosphopyruvate hydratase activity pathway42895
GO:0006094 gluconeogenesis GO:0008964 phosphoenolpyruvate carboxylase activity pathway42895
GO:0006094 gluconeogenesis GO:0008986 pyruvate, water dikinase activity pathway42895
GO:0006094 gluconeogenesis GO:0016619 malate dehydrogenase (oxaloacetate-decarboxylating) activity pathway42895
GO:0006094 gluconeogenesis GO:0030060 L-malate dehydrogenase activity pathway42895
GO:0006094 gluconeogenesis GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity pathway42895
GO:0006098 pentose-phosphate shunt GO:0004345 glucose-6-phosphate dehydrogenase activity pathway41112
GO:0006098 pentose-phosphate shunt GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity pathway41112
GO:0006098 pentose-phosphate shunt GO:0004750 ribulose-phosphate 3-epimerase activity pathway41112
GO:0006098 pentose-phosphate shunt GO:0004751 ribose-5-phosphate isomerase activity pathway41112
GO:0006098 pentose-phosphate shunt GO:0004801 transaldolase activity pathway41112
GO:0006098 pentose-phosphate shunt GO:0004802 transketolase activity pathway41112
GO:0006098 pentose-phosphate shunt GO:0017057 6-phosphogluconolactonase activity pathway41112
GO:0006099 tricarboxylic acid cycle GO:0003994 aconitate hydratase activity pathway41060
GO:0006099 tricarboxylic acid cycle GO:0004108 citrate (Si)-synthase activity pathway41060
GO:0006099 tricarboxylic acid cycle GO:0004333 fumarate hydratase activity pathway41060
GO:0006099 tricarboxylic acid cycle GO:0004450 isocitrate dehydrogenase (NADP+) activity pathway41060
GO:0006099 tricarboxylic acid cycle GO:0004775 succinate-CoA ligase (ADP-forming) activity pathway41060
GO:0006099 tricarboxylic acid cycle GO:0008924 malate dehydrogenase (acceptor) activity pathway41060
GO:0006099 tricarboxylic acid cycle GO:0030060 L-malate dehydrogenase activity pathway41060
GO:0006113 fermentation GO:0004333 fumarate hydratase activity pathway41201
GO:0006113 fermentation GO:0004743 pyruvate kinase activity pathway41201
GO:0006113 fermentation GO:0008720 D-lactate dehydrogenase activity pathway41201
GO:0006113 fermentation GO:0008774 acetaldehyde dehydrogenase (acetylating) activity pathway41201
GO:0006113 fermentation GO:0008776 acetate kinase activity pathway41201
GO:0006113 fermentation GO:0008861 formate C-acetyltransferase activity pathway41201
GO:0006113 fermentation GO:0008959 phosphate acetyltransferase activity pathway41201
GO:0006113 fermentation GO:0008964 phosphoenolpyruvate carboxylase activity pathway41201
GO:0006113 fermentation GO:0008985 pyruvate dehydrogenase (cytochrome) activity pathway41201
GO:0006113 fermentation GO:0030060 L-malate dehydrogenase activity pathway41201
GO:0006164 purine nucleotide biosynthetic process GO:0003921 GMP synthase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0003922 GMP synthase (glutamine-hydrolyzing) activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0003937 IMP cyclohydrolase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0003938 IMP dehydrogenase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004017 adenylate kinase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004018 adenylosuccinate lyase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004019 adenylosuccinate synthase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004044 amidophosphoribosyltransferase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004385 guanylate kinase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004637 phosphoribosylamine-glycine ligase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004642 phosphoribosylformylglycinamidine synthase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0004644 phosphoribosylglycinamide formyltransferase activity pathway42197
GO:0006164 purine nucleotide biosynthetic process GO:0051061 ADP reductase activity pathway42197
GO:0006526 arginine biosynthetic process GO:0004055 argininosuccinate synthase activity pathway43266
GO:0006526 arginine biosynthetic process GO:0004056 argininosuccinate lyase activity pathway43266
GO:0006526 arginine biosynthetic process GO:0004353 glutamate dehydrogenase [NAD(P)+] activity pathway43266
GO:0006526 arginine biosynthetic process GO:0004585 ornithine carbamoyltransferase activity pathway43266
GO:0006532 aspartate biosynthetic process GO:0004069 aspartate transaminase activity pathway43251
GO:0006532 aspartate biosynthetic process GO:0004736 pyruvate carboxylase activity pathway43251
GO:0006540 glutamate decarboxylation to succinate GO:0003867 4-aminobutyrate transaminase activity pathway41825
GO:0006540 glutamate decarboxylation to succinate GO:0004351 glutamate decarboxylase activity pathway41825
GO:0006540 glutamate decarboxylation to succinate GO:0004777 succinate-semialdehyde dehydrogenase activity pathway41825
GO:0006542 glutamine biosynthetic process GO:0004356 glutamate-ammonia ligase activity pathway43217
GO:0006542 glutamine biosynthetic process GO:0004356 glutamate-ammonia ligase activity pathway43220
GO:0006550 isoleucine catabolic process GO:0004493 methylmalonyl-CoA epimerase activity pathway41772
GO:0006550 isoleucine catabolic process GO:0004494 methylmalonyl-CoA mutase activity pathway41772
GO:0006550 isoleucine catabolic process GO:0004658 propionyl-CoA carboxylase activity pathway41772
GO:0006550 isoleucine catabolic process GO:0047015 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity pathway41764
GO:0006550 isoleucine catabolic process GO:0047015 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity pathway41772
GO:0006552 leucine catabolic process GO:0004084 branched-chain-amino-acid transaminase activity pathway41747
GO:0006552 leucine catabolic process GO:0004084 branched-chain-amino-acid transaminase activity pathway41756
GO:0006552 leucine catabolic process GO:0004419 hydroxymethylglutaryl-CoA lyase activity pathway41747
GO:0006552 leucine catabolic process GO:0004419 hydroxymethylglutaryl-CoA lyase activity pathway41756
GO:0006552 leucine catabolic process GO:0004485 methylcrotonoyl-CoA carboxylase activity pathway41747
GO:0006552 leucine catabolic process GO:0004485 methylcrotonoyl-CoA carboxylase activity pathway41756
GO:0006552 leucine catabolic process GO:0004490 methylglutaconyl-CoA hydratase activity pathway41747
GO:0006552 leucine catabolic process GO:0004490 methylglutaconyl-CoA hydratase activity pathway41756
GO:0006552 leucine catabolic process GO:0008470 isovaleryl-CoA dehydrogenase activity pathway41747
GO:0006556 S-adenosylmethionine biosynthetic process GO:0004478 methionine adenosyltransferase activity pathway42734
GO:0006561 proline biosynthetic process GO:0004349 glutamate 5-kinase activity pathway42938
GO:0006561 proline biosynthetic process GO:0004350 glutamate-5-semialdehyde dehydrogenase activity pathway42938
GO:0006561 proline biosynthetic process GO:0004353 glutamate dehydrogenase [NAD(P)+] activity pathway42938
GO:0006561 proline biosynthetic process GO:0004735 pyrroline-5-carboxylate reductase activity pathway42932
GO:0006561 proline biosynthetic process GO:0004735 pyrroline-5-carboxylate reductase activity pathway42938
GO:0006564 L-serine biosynthetic process GO:0004617 phosphoglycerate dehydrogenase activity pathway42919
GO:0006564 L-serine biosynthetic process GO:0004648 phosphoserine transaminase activity pathway42919
GO:0006565 L-serine catabolic process GO:0003941 L-serine ammonia-lyase activity pathway41692
GO:0006567 threonine catabolic process GO:0004794 L-threonine ammonia-lyase activity pathway43202
GO:0006567 threonine catabolic process GO:0008743 L-threonine 3-dehydrogenase activity pathway43202
GO:0006567 threonine catabolic process GO:0008890 glycine C-acetyltransferase activity pathway43202
GO:0006574 valine catabolic process GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity pathway41643
GO:0006574 valine catabolic process GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity pathway41643
GO:0006574 valine catabolic process GO:0008442 3-hydroxyisobutyrate dehydrogenase activity pathway41643
GO:0006574 valine catabolic process GO:0047101 2-oxoisovalerate dehydrogenase (acylating) activity pathway41643
GO:0006592 ornithine biosynthetic process GO:0004586 ornithine decarboxylase activity pathway42065
GO:0006592 ornithine biosynthetic process GO:0004766 spermidine synthase activity pathway42065
GO:0006592 ornithine biosynthetic process GO:0016768 spermine synthase activity pathway42065
GO:0006596 polyamine biosynthetic process GO:0004014 adenosylmethionine decarboxylase activity pathway42054
GO:0006596 polyamine biosynthetic process GO:0004586 ornithine decarboxylase activity pathway42054
GO:0006596 polyamine biosynthetic process GO:0004766 spermidine synthase activity pathway42054
GO:0006597 spermine biosynthetic process GO:0004586 ornithine decarboxylase activity pathway42065
GO:0006597 spermine biosynthetic process GO:0004766 spermidine synthase activity pathway42065
GO:0006597 spermine biosynthetic process GO:0016768 spermine synthase activity pathway42065
GO:0006633 fatty acid biosynthetic process GO:0003989 acetyl-CoA carboxylase activity pathway42461
GO:0006633 fatty acid biosynthetic process GO:0004313 [acyl-carrier-protein] S-acetyltransferase activity pathway42461
GO:0006633 fatty acid biosynthetic process GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity pathway42461
GO:0006750 glutathione biosynthetic process GO:0004357 glutamate-cysteine ligase activity pathway42615
GO:0006750 glutathione biosynthetic process GO:0004363 glutathione synthase activity pathway42615
GO:0006769 nicotinamide metabolic process GO:0003951 NAD+ kinase activity pathway42707
GO:0006769 nicotinamide metabolic process GO:0003957 NAD(P)+ transhydrogenase (B-specific) activity pathway42707
GO:0006769 nicotinamide metabolic process GO:0019178 NADP phosphatase activity pathway42707
GO:0006769 nicotinamide metabolic process GO:0042736 NADH kinase activity pathway42707
GO:0008295 spermidine biosynthetic process GO:0004014 adenosylmethionine decarboxylase activity pathway42059
GO:0008295 spermidine biosynthetic process GO:0004014 adenosylmethionine decarboxylase activity pathway42070
GO:0008295 spermidine biosynthetic process GO:0004586 ornithine decarboxylase activity pathway42059
GO:0008295 spermidine biosynthetic process GO:0004766 spermidine synthase activity pathway42059
GO:0008295 spermidine biosynthetic process GO:0004766 spermidine synthase activity pathway42070
GO:0008295 spermidine biosynthetic process GO:0016768 spermine synthase activity pathway42059
GO:0008654 phospholipid biosynthetic process GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0003881 CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity pathway42437
GO:0008654 phospholipid biosynthetic process GO:0004103 choline kinase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004105 choline-phosphate cytidylyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004305 ethanolamine kinase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004306 ethanolamine-phosphate cytidylyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004307 ethanolaminephosphotransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004366 glycerol-3-phosphate O-acyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004435 phosphoinositide phospholipase C activity pathway41456
GO:0008654 phospholipid biosynthetic process GO:0004605 phosphatidate cytidylyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004605 phosphatidate cytidylyltransferase activity pathway42437
GO:0008654 phospholipid biosynthetic process GO:0004609 phosphatidylserine decarboxylase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0004609 phosphatidylserine decarboxylase activity pathway42437
GO:0008654 phospholipid biosynthetic process GO:0004623 phospholipase A2 activity pathway41456
GO:0008654 phospholipid biosynthetic process GO:0008195 phosphatidate phosphatase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity pathway42437
GO:0008654 phospholipid biosynthetic process GO:0008808 cardiolipin synthase activity pathway42437
GO:0008654 phospholipid biosynthetic process GO:0008962 phosphatidylglycerophosphatase activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0008962 phosphatidylglycerophosphatase activity pathway42437
GO:0008654 phospholipid biosynthetic process GO:0008970 phospholipase A1 activity pathway41456
GO:0008654 phospholipid biosynthetic process GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity pathway42418
GO:0008654 phospholipid biosynthetic process GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity pathway42437
GO:0009051 pentose-phosphate shunt, oxidative branch GO:0004345 glucose-6-phosphate dehydrogenase activity pathway41122
GO:0009051 pentose-phosphate shunt, oxidative branch GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity pathway41122
GO:0009051 pentose-phosphate shunt, oxidative branch GO:0017057 6-phosphogluconolactonase activity pathway41122
GO:0009052 pentose-phosphate shunt, non-oxidative branch GO:0004750 ribulose-phosphate 3-epimerase activity pathway41127
GO:0009052 pentose-phosphate shunt, non-oxidative branch GO:0004751 ribose-5-phosphate isomerase activity pathway41127
GO:0009052 pentose-phosphate shunt, non-oxidative branch GO:0004801 transaldolase activity pathway41127
GO:0009052 pentose-phosphate shunt, non-oxidative branch GO:0004802 transketolase activity pathway41127
GO:0009061 anaerobic respiration GO:0003994 aconitate hydratase activity pathway41089
GO:0009061 anaerobic respiration GO:0004108 citrate (Si)-synthase activity pathway41089
GO:0009061 anaerobic respiration GO:0004333 fumarate hydratase activity pathway41089
GO:0009061 anaerobic respiration GO:0004450 isocitrate dehydrogenase (NADP+) activity pathway41089
GO:0009061 anaerobic respiration GO:0004634 phosphopyruvate hydratase activity pathway41089
GO:0009061 anaerobic respiration GO:0004743 pyruvate kinase activity pathway41089
GO:0009061 anaerobic respiration GO:0008861 formate C-acetyltransferase activity pathway41089
GO:0009061 anaerobic respiration GO:0008964 phosphoenolpyruvate carboxylase activity pathway41089
GO:0009061 anaerobic respiration GO:0030060 L-malate dehydrogenase activity pathway41089
GO:0009091 homoserine catabolic process GO:0004122 cystathionine beta-synthase activity pathway41783
GO:0009091 homoserine catabolic process GO:0004123 cystathionine gamma-lyase activity pathway41783
GO:0009097 isoleucine biosynthetic process GO:0004794 L-threonine ammonia-lyase activity pathway43195
GO:0009099 valine biosynthetic process GO:0003984 acetolactate synthase activity pathway42910
GO:0009099 valine biosynthetic process GO:0004160 dihydroxy-acid dehydratase activity pathway42910
GO:0009099 valine biosynthetic process GO:0004455 ketol-acid reductoisomerase activity pathway42910
GO:0009113 purine base biosynthetic process GO:0003922 GMP synthase (glutamine-hydrolyzing) activity pathway42181
GO:0009113 purine base biosynthetic process GO:0003937 IMP cyclohydrolase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0003938 IMP dehydrogenase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004018 adenylosuccinate lyase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004019 adenylosuccinate synthase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004044 amidophosphoribosyltransferase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004637 phosphoribosylamine-glycine ligase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004638 phosphoribosylaminoimidazole carboxylase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004642 phosphoribosylformylglycinamidine synthase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity pathway42181
GO:0009113 purine base biosynthetic process GO:0004644 phosphoribosylglycinamide formyltransferase activity pathway42181
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0003883 CTP synthase activity pathway42113
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0004070 aspartate carbamoyltransferase activity pathway42113
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity pathway42113
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0004151 dihydroorotase activity pathway42113
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0004158 dihydroorotate oxidase activity pathway42113
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0004588 orotate phosphoribosyltransferase activity pathway42113
GO:0009220 pyrimidine ribonucleotide biosynthetic process GO:0004590 orotidine-5'-phosphate decarboxylase activity pathway42113
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process GO:0004170 dUTP diphosphatase activity pathway42088
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process GO:0004798 thymidylate kinase activity pathway42088
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process GO:0004799 thymidylate synthase activity pathway42088
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process GO:0008829 dCTP deaminase activity pathway42088
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process GO:0051062 UDP reductase activity pathway42088
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process GO:0051063 CDP reductase activity pathway42088
GO:0009242 colanic acid biosynthetic process GO:0003978 UDP-glucose 4-epimerase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0003979 UDP-glucose 6-dehydrogenase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0004335 galactokinase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0004476 mannose-6-phosphate isomerase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0004615 phosphomannomutase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0008446 GDP-mannose 4,6-dehydratase activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0008928 mannose-1-phosphate guanylyltransferase (GDP) activity pathway42772
GO:0009242 colanic acid biosynthetic process GO:0050577 GDP-L-fucose synthase activity pathway42772
GO:0009438 methylglyoxal metabolic process GO:0004416 hydroxyacylglutathione hydrolase activity pathway41979
GO:0009438 methylglyoxal metabolic process GO:0004462 lactoylglutathione lyase activity pathway41979
GO:0009438 methylglyoxal metabolic process GO:0008911 lactaldehyde dehydrogenase activity pathway41979
GO:0009438 methylglyoxal metabolic process GO:0043892 methylglyoxal reductase (NADPH-dependent) activity pathway41979
GO:0009443 pyridoxal 5'-phosphate salvage GO:0004733 pyridoxamine-phosphate oxidase activity pathway42519
GO:0009443 pyridoxal 5'-phosphate salvage GO:0008478 pyridoxal kinase activity pathway42519
GO:0009444 pyruvate oxidation GO:0003987 acetate-CoA ligase activity pathway41072
GO:0009444 pyruvate oxidation GO:0008776 acetate kinase activity pathway41072
GO:0009444 pyruvate oxidation GO:0008959 phosphate acetyltransferase activity pathway41072
GO:0009444 pyruvate oxidation GO:0008985 pyruvate dehydrogenase (cytochrome) activity pathway41072
GO:0009450 gamma-aminobutyric acid catabolic process GO:0003867 4-aminobutyrate transaminase activity pathway41929
GO:0009450 gamma-aminobutyric acid catabolic process GO:0004777 succinate-semialdehyde dehydrogenase activity pathway41929
GO:0009450 gamma-aminobutyric acid catabolic process GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity pathway41929
GO:0010131 sucrose catabolic process, using invertase or sucrose synthase GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity pathway41531
GO:0010131 sucrose catabolic process, using invertase or sucrose synthase GO:0004347 glucose-6-phosphate isomerase activity pathway41531
GO:0010131 sucrose catabolic process, using invertase or sucrose synthase GO:0004614 phosphoglucomutase activity pathway41531
GO:0010131 sucrose catabolic process, using invertase or sucrose synthase GO:0008865 fructokinase activity pathway41531
GO:0010131 sucrose catabolic process, using invertase or sucrose synthase GO:0016157 sucrose synthase activity pathway41531
GO:0010131 sucrose catabolic process, using invertase or sucrose synthase GO:0047938 glucose-6-phosphate 1-epimerase activity pathway41531
GO:0010133 proline catabolic process to glutamate GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity pathway41695
GO:0010133 proline catabolic process to glutamate GO:0051699 proline oxidase activity pathway41695
GO:0010138 pyrimidine ribonucleotide salvage GO:0004126 cytidine deaminase activity pathway42103
GO:0010138 pyrimidine ribonucleotide salvage GO:0004127 cytidylate kinase activity pathway42103
GO:0010138 pyrimidine ribonucleotide salvage GO:0004131 cytosine deaminase activity pathway42103
GO:0010138 pyrimidine ribonucleotide salvage GO:0004845 uracil phosphoribosyltransferase activity pathway42103
GO:0010138 pyrimidine ribonucleotide salvage GO:0004850 uridine phosphorylase activity pathway42103
GO:0010139 pyrimidine deoxyribonucleotide salvage GO:0004797 thymidine kinase activity pathway42081
GO:0010139 pyrimidine deoxyribonucleotide salvage GO:0009032 thymidine phosphorylase activity pathway42081
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0003985 acetyl-CoA C-acetyltransferase activity pathway42737
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0004163 diphosphomevalonate decarboxylase activity pathway42737
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity pathway42737
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0004421 hydroxymethylglutaryl-CoA synthase activity pathway42737
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0004452 isopentenyl-diphosphate delta-isomerase activity pathway42737
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0004496 mevalonate kinase activity pathway42737
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway GO:0004631 phosphomevalonate kinase activity pathway42737
GO:0015937 coenzyme A biosynthetic process GO:0004140 dephospho-CoA kinase activity pathway42727
GO:0015937 coenzyme A biosynthetic process GO:0004594 pantothenate kinase activity pathway42727
GO:0015937 coenzyme A biosynthetic process GO:0004595 pantetheine-phosphate adenylyltransferase activity pathway42727
GO:0015937 coenzyme A biosynthetic process GO:0004632 phosphopantothenate--cysteine ligase activity pathway42727
GO:0015937 coenzyme A biosynthetic process GO:0004633 phosphopantothenoylcysteine decarboxylase activity pathway42727
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0003999 adenine phosphoribosyltransferase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004017 adenylate kinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004126 cytidine deaminase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004127 cytidylate kinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004385 guanylate kinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004749 ribose phosphate diphosphokinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004797 thymidine kinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004798 thymidylate kinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004799 thymidylate synthase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004845 uracil phosphoribosyltransferase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0004849 uridine kinase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0009032 thymidine phosphorylase activity pathway42162
GO:0015949 nucleobase, nucleoside and nucleotide interconversion GO:0047975 guanosine phosphorylase activity pathway42162
GO:0019240 citrulline biosynthetic process GO:0004053 arginase activity pathway43157
GO:0019240 citrulline biosynthetic process GO:0004349 glutamate 5-kinase activity pathway43157
GO:0019240 citrulline biosynthetic process GO:0004350 glutamate-5-semialdehyde dehydrogenase activity pathway43157
GO:0019240 citrulline biosynthetic process GO:0004359 glutaminase activity pathway43157
GO:0019240 citrulline biosynthetic process GO:0004585 ornithine carbamoyltransferase activity pathway43157
GO:0019240 citrulline biosynthetic process GO:0051699 proline oxidase activity pathway43157
GO:0019241 citrulline catabolic process GO:0004585 ornithine carbamoyltransferase activity pathway41708
GO:0019241 citrulline catabolic process GO:0008804 carbamate kinase activity pathway41708
GO:0019251 anaerobic cobalamin biosynthetic process GO:0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity pathway42551
GO:0019251 anaerobic cobalamin biosynthetic process GO:0008820 cobinamide phosphate guanylyltransferase activity pathway42551
GO:0019251 anaerobic cobalamin biosynthetic process GO:0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity pathway42551
GO:0019251 anaerobic cobalamin biosynthetic process GO:0019175 alpha-ribazole-5'-P phosphatase activity pathway42551
GO:0019251 anaerobic cobalamin biosynthetic process GO:0051073 adenosylcobinamide-GDP ribazoletransferase activity pathway42551
GO:0019255 glucose 1-phosphate metabolic process GO:0004340 glucokinase activity pathway41577
GO:0019255 glucose 1-phosphate metabolic process GO:0004614 phosphoglucomutase activity pathway41577
GO:0019255 glucose 1-phosphate metabolic process GO:0008876 quinoprotein glucose dehydrogenase activity pathway41577
GO:0019255 glucose 1-phosphate metabolic process GO:0008877 glucose-1-phosphatase activity pathway41577
GO:0019262 N-acetylneuraminate catabolic process GO:0004342 glucosamine-6-phosphate deaminase activity pathway41507
GO:0019262 N-acetylneuraminate catabolic process GO:0008448 N-acetylglucosamine-6-phosphate deacetylase activity pathway41507
GO:0019262 N-acetylneuraminate catabolic process GO:0008747 N-acetylneuraminate lyase activity pathway41507
GO:0019262 N-acetylneuraminate catabolic process GO:0009385 N-acylmannosamine-6-phosphate 2-epimerase activity pathway41507
GO:0019264 glycine biosynthetic process from serine GO:0004372 glycine hydroxymethyltransferase activity pathway43211
GO:0019266 asparagine biosynthetic process from oxaloacetate GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity pathway43258
GO:0019272 L-alanine biosynthetic process from pyruvate GO:0004021 alanine transaminase activity pathway43281
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity pathway42027
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process GO:0004343 glucosamine 6-phosphate N-acetyltransferase activity pathway42027
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity pathway42027
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process GO:0004610 phosphoacetylglucosamine mutase activity pathway42027
GO:0019285 glycine betaine biosynthetic process from choline GO:0008802 betaine-aldehyde dehydrogenase activity pathway42042
GO:0019285 glycine betaine biosynthetic process from choline GO:0008802 betaine-aldehyde dehydrogenase activity pathway42046
GO:0019285 glycine betaine biosynthetic process from choline GO:0008812 choline dehydrogenase activity pathway42042
GO:0019285 glycine betaine biosynthetic process from choline GO:0008812 choline dehydrogenase activity pathway42046
GO:0019286 glycine betaine biosynthetic process from glycine GO:0017174 glycine N-methyltransferase activity pathway42036
GO:0019303 D-ribose catabolic process GO:0004747 ribokinase activity pathway41549
GO:0019306 GDP-D-rhamnose biosynthetic process GO:0008446 GDP-mannose 4,6-dehydratase activity pathway42820
GO:0019306 GDP-D-rhamnose biosynthetic process GO:0042356 GDP-4-dehydro-D-rhamnose reductase activity pathway42820
GO:0019309 mannose catabolic process GO:0004476 mannose-6-phosphate isomerase activity pathway41573
GO:0019309 mannose catabolic process GO:0019158 mannokinase activity pathway41573
GO:0019343 cysteine biosynthetic process via cystathionine GO:0004122 cystathionine beta-synthase activity pathway43236
GO:0019343 cysteine biosynthetic process via cystathionine GO:0004617 phosphoglycerate dehydrogenase activity pathway43236
GO:0019343 cysteine biosynthetic process via cystathionine GO:0004647 phosphoserine phosphatase activity pathway43236
GO:0019343 cysteine biosynthetic process via cystathionine GO:0004648 phosphoserine transaminase activity pathway43236
GO:0019358 nicotinate nucleotide salvage GO:0000210 NAD+ diphosphatase activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0003952 NAD+ synthase (glutamine-hydrolyzing) activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0003953 NAD+ nucleosidase activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0004515 nicotinate-nucleotide adenylyltransferase activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0004516 nicotinate phosphoribosyltransferase activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0008936 nicotinamidase activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0019159 nicotinamide-nucleotide amidase activity pathway42648
GO:0019358 nicotinate nucleotide salvage GO:0019160 NMN nucleosidase activity pathway42648
GO:0019363 pyridine nucleotide biosynthetic process GO:0003952 NAD+ synthase (glutamine-hydrolyzing) activity pathway42640
GO:0019363 pyridine nucleotide biosynthetic process GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity pathway42640
GO:0019363 pyridine nucleotide biosynthetic process GO:0004515 nicotinate-nucleotide adenylyltransferase activity pathway42640
GO:0019363 pyridine nucleotide biosynthetic process GO:0008795 NAD+ synthase activity pathway42640
GO:0019363 pyridine nucleotide biosynthetic process GO:0008987 quinolinate synthetase A activity pathway42640
GO:0019367 fatty acid elongation, saturated fatty acid GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity pathway42469
GO:0019367 fatty acid elongation, saturated fatty acid GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity pathway42469
GO:0019367 fatty acid elongation, saturated fatty acid GO:0004318 enoyl-[acyl-carrier-protein] reductase (NADH) activity pathway42469
GO:0019367 fatty acid elongation, saturated fatty acid GO:0004319 enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity pathway42469
GO:0019367 fatty acid elongation, saturated fatty acid GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity pathway42469
GO:0019395 fatty acid oxidation GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity pathway41444
GO:0019395 fatty acid oxidation GO:0003988 acetyl-CoA C-acyltransferase activity pathway41444
GO:0019395 fatty acid oxidation GO:0003995 acyl-CoA dehydrogenase activity pathway41444
GO:0019395 fatty acid oxidation GO:0004165 dodecenoyl-CoA delta-isomerase activity pathway41444
GO:0019395 fatty acid oxidation GO:0004300 enoyl-CoA hydratase activity pathway41444
GO:0019395 fatty acid oxidation GO:0004467 long-chain-fatty-acid-CoA ligase activity pathway41444
GO:0019395 fatty acid oxidation GO:0008692 3-hydroxybutyryl-CoA epimerase activity pathway41444
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0004329 formate-tetrahydrofolate ligase activity pathway41596
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0004477 methenyltetrahydrofolate cyclohydrolase activity pathway41596
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity pathway41596
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0018492 carbon-monoxide dehydrogenase (acceptor) activity pathway41596
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0043884 CO-methylating acetyl-CoA synthase activity pathway41596
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0043885 carbon-monoxide dehydrogenase (ferredoxin) activity pathway41596
GO:0019415 acetate biosynthetic process from carbon monoxide GO:0047899 formate dehydrogenase (NADP+) activity pathway41596
GO:0019430 removal of superoxide radicals GO:0004096 catalase activity pathway41358
GO:0019430 removal of superoxide radicals GO:0004784 superoxide dismutase activity pathway41358
GO:0019432 triacylglycerol biosynthetic process GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity pathway42481
GO:0019432 triacylglycerol biosynthetic process GO:0004144 diacylglycerol O-acyltransferase activity pathway42481
GO:0019432 triacylglycerol biosynthetic process GO:0004366 glycerol-3-phosphate O-acyltransferase activity pathway42481
GO:0019432 triacylglycerol biosynthetic process GO:0008195 phosphatidate phosphatase activity pathway42481
GO:0019433 triacylglycerol catabolic process GO:0004806 triacylglycerol lipase activity pathway41462
GO:0019433 triacylglycerol catabolic process GO:0047372 acylglycerol lipase activity pathway41462
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0000334 3-hydroxyanthranilate 3,4-dioxygenase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0003859 3-hydroxybutyryl-CoA dehydratase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0003985 acetyl-CoA C-acetyltransferase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0004061 arylformamidase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0004502 kynurenine 3-monooxygenase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0004833 tryptophan 2,3-dioxygenase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0018801 glutaconyl-CoA decarboxylase activity pathway41659
GO:0019442 tryptophan catabolic process to acetyl-CoA GO:0047102 aminomuconate-semialdehyde dehydrogenase activity pathway41659
GO:0019444 tryptophan catabolic process to catechol GO:0004061 arylformamidase activity pathway41675
GO:0019444 tryptophan catabolic process to catechol GO:0004833 tryptophan 2,3-dioxygenase activity pathway41675
GO:0019444 tryptophan catabolic process to catechol GO:0018618 anthranilate 1,2-dioxygenase (deaminating, decarboxylating) activity pathway41675
GO:0019444 tryptophan catabolic process to catechol GO:0030429 kynureninase activity pathway41675
GO:0019445 tyrosine catabolic process to fumarate GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity pathway41652
GO:0019445 tyrosine catabolic process to fumarate GO:0004334 fumarylacetoacetase activity pathway41652
GO:0019445 tyrosine catabolic process to fumarate GO:0004411 homogentisate 1,2-dioxygenase activity pathway41652
GO:0019445 tyrosine catabolic process to fumarate GO:0004838 tyrosine transaminase activity pathway41652
GO:0019445 tyrosine catabolic process to fumarate GO:0016034 maleylacetoacetate isomerase activity pathway41652
GO:0019449 L-cysteine catabolic process to hypotaurine GO:0004782 sulfinoalanine decarboxylase activity pathway41842
GO:0019449 L-cysteine catabolic process to hypotaurine GO:0017172 cysteine dioxygenase activity pathway41842
GO:0019462 glutamate catabolic process to fumarate, using glutaminase GO:0004069 aspartate transaminase activity pathway41806
GO:0019462 glutamate catabolic process to fumarate, using glutaminase GO:0004359 glutaminase activity pathway41806
GO:0019462 glutamate catabolic process to fumarate, using glutaminase GO:0008797 aspartate ammonia-lyase activity pathway41806
GO:0019463 glycine catabolic process to creatine GO:0015068 glycine amidinotransferase activity pathway41795
GO:0019463 glycine catabolic process to creatine GO:0030731 guanidinoacetate N-methyltransferase activity pathway41795
GO:0019464 glycine decarboxylation via glycine cleavage system GO:0004047 aminomethyltransferase activity pathway41799
GO:0019464 glycine decarboxylation via glycine cleavage system GO:0004329 formate-tetrahydrofolate ligase activity pathway41799
GO:0019464 glycine decarboxylation via glycine cleavage system GO:0004375 glycine dehydrogenase (decarboxylating) activity pathway41799
GO:0019464 glycine decarboxylation via glycine cleavage system GO:0004477 methenyltetrahydrofolate cyclohydrolase activity pathway41799
GO:0019464 glycine decarboxylation via glycine cleavage system GO:0004487 methylenetetrahydrofolate dehydrogenase (NAD+) activity pathway41799
GO:0019465 aspartate transamidation GO:0004069 aspartate transaminase activity pathway43255
GO:0019467 ornithine catabolic process, by decarboxylation GO:0004586 ornithine decarboxylase activity pathway41951
GO:0019470 4-hydroxyproline catabolic process GO:0008700 4-hydroxy-2-oxoglutarate aldolase activity pathway41887
GO:0019470 4-hydroxyproline catabolic process GO:0047578 4-hydroxyglutamate transaminase activity pathway41887
GO:0019481 L-alanine catabolic process, by transamination GO:0004021 alanine transaminase activity pathway41884
GO:0019493 arginine catabolic process to proline GO:0004053 arginase activity pathway42945
GO:0019493 arginine catabolic process to proline GO:0004735 pyrroline-5-carboxylate reductase activity pathway42945
GO:0019494 proline oxidation GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity pathway41695
GO:0019494 proline oxidation GO:0051699 proline oxidase activity pathway41695
GO:0019496 serine-isocitrate lyase pathway GO:0003994 aconitate hydratase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0004108 citrate (Si)-synthase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0004372 glycine hydroxymethyltransferase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0004451 isocitrate lyase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0004619 phosphoglycerate mutase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0004634 phosphopyruvate hydratase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0008887 glycerate kinase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0008964 phosphoenolpyruvate carboxylase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0016618 hydroxypyruvate reductase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0030060 L-malate dehydrogenase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0050074 malate-CoA ligase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0050083 malyl-CoA lyase activity pathway41606
GO:0019496 serine-isocitrate lyase pathway GO:0050281 serine-glyoxylate transaminase activity pathway41606
GO:0019509 methionine salvage GO:0008930 methylthioadenosine nucleosidase activity pathway43173
GO:0019509 methionine salvage GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity pathway43173
GO:0019509 methionine salvage GO:0043715 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity pathway43173
GO:0019509 methionine salvage GO:0046522 S-methyl-5-thioribose kinase activity pathway43173
GO:0019509 methionine salvage GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity pathway43173
GO:0019509 methionine salvage GO:0046570 5-methylthioribulose-1-phosphate 4-dehydratase activity pathway43173
GO:0019510 S-adenosylhomocysteine catabolic process GO:0008705 methionine synthase activity pathway43183
GO:0019510 S-adenosylhomocysteine catabolic process GO:0047150 betaine-homocysteine S-methyltransferase activity pathway43183
GO:0019516 lactate oxidation GO:0004459 L-lactate dehydrogenase activity pathway41514
GO:0019516 lactate oxidation GO:0008776 acetate kinase activity pathway41514
GO:0019516 lactate oxidation GO:0008959 phosphate acetyltransferase activity pathway41514
GO:0019518 threonine catabolic process to pyruvate GO:0008743 L-threonine 3-dehydrogenase activity pathway41688
GO:0019518 threonine catabolic process to pyruvate GO:0008890 glycine C-acetyltransferase activity pathway41688
GO:0019544 arginine catabolic process to glutamate GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity pathway41861
GO:0019544 arginine catabolic process to glutamate GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity pathway43230
GO:0019544 arginine catabolic process to glutamate GO:0004053 arginase activity pathway41861
GO:0019544 arginine catabolic process to glutamate GO:0004053 arginase activity pathway43230
GO:0019545 arginine catabolic process to succinate GO:0003867 4-aminobutyrate transaminase activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0004777 succinate-semialdehyde dehydrogenase activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0008792 arginine decarboxylase activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0019145 aminobutyraldehyde dehydrogenase activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0047632 agmatine deiminase activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0050126 N-carbamoylputrescine amidase activity pathway41874
GO:0019545 arginine catabolic process to succinate GO:0050232 putrescine oxidase activity pathway41874
GO:0019548 arginine catabolic process to spermine GO:0004014 adenosylmethionine decarboxylase activity pathway42074
GO:0019548 arginine catabolic process to spermine GO:0016768 spermine synthase activity pathway42074
GO:0019550 glutamate catabolic process to aspartate GO:0004069 aspartate transaminase activity pathway43247
GO:0019550 glutamate catabolic process to aspartate GO:0008797 aspartate ammonia-lyase activity pathway43247
GO:0019554 glutamate catabolic process to oxaloacetate GO:0000104 succinate dehydrogenase activity pathway41817
GO:0019554 glutamate catabolic process to oxaloacetate GO:0004069 aspartate transaminase activity pathway41817
GO:0019554 glutamate catabolic process to oxaloacetate GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity pathway41817
GO:0019554 glutamate catabolic process to oxaloacetate GO:0004333 fumarate hydratase activity pathway41817
GO:0019554 glutamate catabolic process to oxaloacetate GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity pathway41817
GO:0019554 glutamate catabolic process to oxaloacetate GO:0004775 succinate-CoA ligase (ADP-forming) activity pathway41817
GO:0019562 phenylalanine catabolic process to phosphoenolpyruvate GO:0004505 phenylalanine 4-monooxygenase activity pathway41703
GO:0019563 glycerol catabolic process GO:0004370 glycerol kinase activity pathway41989
GO:0019563 glycerol catabolic process GO:0004370 glycerol kinase activity pathway41994
GO:0019563 glycerol catabolic process GO:0008889 glycerophosphodiester phosphodiesterase activity pathway41989
GO:0019564 aerobic glycerol catabolic process GO:0004370 glycerol kinase activity pathway41989
GO:0019564 aerobic glycerol catabolic process GO:0008889 glycerophosphodiester phosphodiesterase activity pathway41989
GO:0019595 non-phosphorylated glucose catabolic process GO:0004034 aldose 1-epimerase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0004341 gluconolactonase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0004634 phosphopyruvate hydratase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0004743 pyruvate kinase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0019164 pyruvate synthase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0043798 glycerate 2-kinase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0047929 gluconate dehydratase activity pathway41561
GO:0019595 non-phosphorylated glucose catabolic process GO:0047936 glucose 1-dehydrogenase activity pathway41561
GO:0019621 creatinine catabolic process to formate GO:0008115 sarcosine oxidase activity pathway41919
GO:0019621 creatinine catabolic process to formate GO:0008480 sarcosine dehydrogenase activity pathway41919
GO:0019621 creatinine catabolic process to formate GO:0016980 creatinase activity pathway41919
GO:0019621 creatinine catabolic process to formate GO:0047789 creatininase activity pathway41919
GO:0019641 Embden-Meyerhof pathway GO:0003872 6-phosphofructokinase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004332 fructose-bisphosphate aldolase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004347 glucose-6-phosphate isomerase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004618 phosphoglycerate kinase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004619 phosphoglycerate mutase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004634 phosphopyruvate hydratase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004743 pyruvate kinase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0004807 triose-phosphate isomerase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0008986 pyruvate, water dikinase activity pathway41158
GO:0019641 Embden-Meyerhof pathway GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity pathway41158
GO:0019642 anaerobic glycolysis GO:0003872 6-phosphofructokinase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004332 fructose-bisphosphate aldolase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004340 glucokinase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004347 glucose-6-phosphate isomerase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004618 phosphoglycerate kinase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004619 phosphoglycerate mutase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004634 phosphopyruvate hydratase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004743 pyruvate kinase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0004807 triose-phosphate isomerase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0008986 pyruvate, water dikinase activity pathway41171
GO:0019642 anaerobic glycolysis GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity pathway41171
GO:0019657 pyruvate fermentation to propionate GO:0004333 fumarate hydratase activity pathway41192
GO:0019657 pyruvate fermentation to propionate GO:0004493 methylmalonyl-CoA epimerase activity pathway41192
GO:0019657 pyruvate fermentation to propionate GO:0004494 methylmalonyl-CoA mutase activity pathway41192
GO:0019657 pyruvate fermentation to propionate GO:0030060 L-malate dehydrogenase activity pathway41192
GO:0019657 pyruvate fermentation to propionate GO:0043821 propionyl-CoA:succinate CoA-transferase activity pathway41192
GO:0019657 pyruvate fermentation to propionate GO:0047154 methylmalonyl-CoA carboxytransferase activity pathway41192
GO:0019673 GDP-mannose metabolic process GO:0004476 mannose-6-phosphate isomerase activity pathway42765
GO:0019673 GDP-mannose metabolic process GO:0004615 phosphomannomutase activity pathway42765
GO:0019673 GDP-mannose metabolic process GO:0008928 mannose-1-phosphate guanylyltransferase (GDP) activity pathway42765
GO:0019673 GDP-mannose metabolic process GO:0019158 mannokinase activity pathway42765
GO:0019678 propionate metabolic process, methylmalonyl pathway GO:0004493 methylmalonyl-CoA epimerase activity pathway41468
GO:0019678 propionate metabolic process, methylmalonyl pathway GO:0004494 methylmalonyl-CoA mutase activity pathway41468
GO:0019678 propionate metabolic process, methylmalonyl pathway GO:0004658 propionyl-CoA carboxylase activity pathway41468
GO:0019692 deoxyribose phosphate metabolic process GO:0004126 cytidine deaminase activity pathway41392
GO:0019692 deoxyribose phosphate metabolic process GO:0004139 deoxyribose-phosphate aldolase activity pathway41392
GO:0019692 deoxyribose phosphate metabolic process GO:0004802 transketolase activity pathway41392
GO:0019692 deoxyribose phosphate metabolic process GO:0004850 uridine phosphorylase activity pathway41392
GO:0019692 deoxyribose phosphate metabolic process GO:0008973 phosphopentomutase activity pathway41392
GO:0019692 deoxyribose phosphate metabolic process GO:0009032 thymidine phosphorylase activity pathway41392
GO:0019693 ribose phosphate metabolic process GO:0004126 cytidine deaminase activity pathway41392
GO:0019693 ribose phosphate metabolic process GO:0004139 deoxyribose-phosphate aldolase activity pathway41392
GO:0019693 ribose phosphate metabolic process GO:0004802 transketolase activity pathway41392
GO:0019693 ribose phosphate metabolic process GO:0004850 uridine phosphorylase activity pathway41392
GO:0019693 ribose phosphate metabolic process GO:0008973 phosphopentomutase activity pathway41392
GO:0019693 ribose phosphate metabolic process GO:0009032 thymidine phosphorylase activity pathway41392
GO:0032049 cardiolipin biosynthetic process GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity pathway42392
GO:0032049 cardiolipin biosynthetic process GO:0008962 phosphatidylglycerophosphatase activity pathway42392
GO:0033261 regulation of S phase GO:0000310 xanthine phosphoribosyltransferase activity pathway42139
GO:0033261 regulation of S phase GO:0003999 adenine phosphoribosyltransferase activity pathway42148
GO:0033261 regulation of S phase GO:0004000 adenosine deaminase activity pathway42148
GO:0033261 regulation of S phase GO:0008714 AMP nucleosidase activity pathway42148
GO:0033261 regulation of S phase GO:0008892 guanine deaminase activity pathway42139
GO:0033261 regulation of S phase GO:0008906 inosine kinase activity pathway42148
GO:0033320 UDP-D-xylose biosynthetic process GO:0003979 UDP-glucose 6-dehydrogenase activity pathway42862
GO:0033320 UDP-D-xylose biosynthetic process GO:0048040 UDP-glucuronate decarboxylase activity pathway42862
GO:0033323 choline biosynthetic process via CDP-choline GO:0004105 choline-phosphate cytidylyltransferase activity pathway42476
GO:0033345 asparagine catabolic process via L-aspartate GO:0004067 asparaginase activity pathway41850
GO:0033352 UDP-D-apiose biosynthetic process GO:0003979 UDP-glucose 6-dehydrogenase activity pathway42862
GO:0033352 UDP-D-apiose biosynthetic process GO:0048040 UDP-glucuronate decarboxylase activity pathway42862
GO:0033353 S-adenosylmethionine cycle GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity pathway43167
GO:0033353 S-adenosylmethionine cycle GO:0004013 adenosylhomocysteinase activity pathway43167
GO:0033353 S-adenosylmethionine cycle GO:0004478 methionine adenosyltransferase activity pathway43167
GO:0033488 cholesterol biosynthetic process via 24,25-dihydrolanosterol GO:0000250 lanosterol synthase activity pathway42363
GO:0033488 cholesterol biosynthetic process via 24,25-dihydrolanosterol GO:0004310 farnesyl-diphosphate farnesyltransferase activity pathway42363
GO:0033488 cholesterol biosynthetic process via 24,25-dihydrolanosterol GO:0004506 squalene monooxygenase activity pathway42363
GO:0033489 cholesterol biosynthetic process via desmosterol GO:0000250 lanosterol synthase activity pathway42279
GO:0033489 cholesterol biosynthetic process via desmosterol GO:0004310 farnesyl-diphosphate farnesyltransferase activity pathway42279
GO:0033489 cholesterol biosynthetic process via desmosterol GO:0004506 squalene monooxygenase activity pathway42279
GO:0033490 cholesterol biosynthetic process via lathosterol GO:0000250 lanosterol synthase activity pathway42303
GO:0033490 cholesterol biosynthetic process via lathosterol GO:0004310 farnesyl-diphosphate farnesyltransferase activity pathway42303
GO:0033490 cholesterol biosynthetic process via lathosterol GO:0004506 squalene monooxygenase activity pathway42303
GO:0033499 galactose catabolic process via UDP-galactose GO:0003978 UDP-glucose 4-epimerase activity pathway42866
GO:0033499 galactose catabolic process via UDP-galactose GO:0003979 UDP-glucose 6-dehydrogenase activity pathway42866
GO:0033499 galactose catabolic process via UDP-galactose GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity pathway42866
GO:0033499 galactose catabolic process via UDP-galactose GO:0004335 galactokinase activity pathway42866
GO:0033499 galactose catabolic process via UDP-galactose GO:0016157 sucrose synthase activity pathway42866
GO:0033499 galactose catabolic process via UDP-galactose GO:0017103 UTP:galactose-1-phosphate uridylyltransferase activity pathway42866
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine GO:0047130 saccharopine dehydrogenase (NADP+, L-lysine-forming) activity pathway41740
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine GO:0047131 saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity pathway41740
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine GO:0047536 2-aminoadipate transaminase activity pathway41740
GO:0033514 L-lysine catabolic process to acetyl-CoA via L-pipecolate GO:0018113 lysine racemase activity pathway41728
GO:0033514 L-lysine catabolic process to acetyl-CoA via L-pipecolate GO:0043871 delta1-piperideine-6-carboxylate dehydrogenase activity pathway41728
GO:0033514 L-lysine catabolic process to acetyl-CoA via L-pipecolate GO:0047536 2-aminoadipate transaminase activity pathway41728
GO:0033527 tetrapyrrole biosynthetic process from glycine and succinyl-CoA GO:0003870 5-aminolevulinate synthase activity pathway42560
GO:0033527 tetrapyrrole biosynthetic process from glycine and succinyl-CoA GO:0004418 hydroxymethylbilane synthase activity pathway42560
GO:0033527 tetrapyrrole biosynthetic process from glycine and succinyl-CoA GO:0004655 porphobilinogen synthase activity pathway42560
GO:0033527 tetrapyrrole biosynthetic process from glycine and succinyl-CoA GO:0004852 uroporphyrinogen-III synthase activity pathway42560
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity pathway41444
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0003988 acetyl-CoA C-acyltransferase activity pathway41444
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0003995 acyl-CoA dehydrogenase activity pathway41444
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0004165 dodecenoyl-CoA delta-isomerase activity pathway41444
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0004300 enoyl-CoA hydratase activity pathway41444
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0004467 long-chain-fatty-acid-CoA ligase activity pathway41444
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0008692 3-hydroxybutyryl-CoA epimerase activity pathway41444
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity pathway41431
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase GO:0003988 acetyl-CoA C-acyltransferase activity pathway41431
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase GO:0003997 acyl-CoA oxidase activity pathway41431
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase GO:0004300 enoyl-CoA hydratase activity pathway41431
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase GO:0004467 long-chain-fatty-acid-CoA ligase activity pathway41431
GO:0033541 fatty acid beta-oxidation, unsaturated, odd number GO:0004165 dodecenoyl-CoA delta-isomerase activity pathway41428
GO:0033542 fatty acid beta-oxidation, unsaturated, even number GO:0004300 enoyl-CoA hydratase activity pathway41420
GO:0033542 fatty acid beta-oxidation, unsaturated, even number GO:0008692 3-hydroxybutyryl-CoA epimerase activity pathway41420
GO:0033585 L-phenylalanine biosynthetic process from chorismate via phenylpyruvate GO:0004106 chorismate mutase activity pathway42951
GO:0033585 L-phenylalanine biosynthetic process from chorismate via phenylpyruvate GO:0004664 prephenate dehydratase activity pathway42951
GO:0042351 'de novo' GDP-L-fucose biosynthetic process GO:0008446 GDP-mannose 4,6-dehydratase activity pathway42830
GO:0042351 'de novo' GDP-L-fucose biosynthetic process GO:0050577 GDP-L-fucose synthase activity pathway42830
GO:0042352 GDP-L-fucose salvage GO:0047341 fucose-1-phosphate guanylyltransferase activity pathway42834
GO:0042352 GDP-L-fucose salvage GO:0050201 fucokinase activity pathway42834
GO:0045337 farnesyl diphosphate biosynthetic process GO:0004161 dimethylallyltranstransferase activity pathway42753
GO:0045337 farnesyl diphosphate biosynthetic process GO:0004337 geranyltranstransferase activity pathway42753
GO:0045337 farnesyl diphosphate biosynthetic process GO:0004452 isopentenyl-diphosphate delta-isomerase activity pathway42753
GO:0046177 D-gluconate catabolic process GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity pathway41055
GO:0046177 D-gluconate catabolic process GO:0004751 ribose-5-phosphate isomerase activity pathway41055
GO:0046177 D-gluconate catabolic process GO:0046316 gluconokinase activity pathway41055
GO:0046254 anaerobic toluene catabolic process GO:0018805 benzylsuccinate synthase activity pathway41622
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0003883 CTP synthase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0003921 GMP synthase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0003922 GMP synthase (glutamine-hydrolyzing) activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0003937 IMP cyclohydrolase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0003938 IMP dehydrogenase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004017 adenylate kinase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004018 adenylosuccinate lyase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004019 adenylosuccinate synthase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004044 amidophosphoribosyltransferase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004070 aspartate carbamoyltransferase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004151 dihydroorotase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004158 dihydroorotate oxidase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004385 guanylate kinase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004588 orotate phosphoribosyltransferase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004590 orotidine-5'-phosphate decarboxylase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004637 phosphoribosylamine-glycine ligase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004642 phosphoribosylformylglycinamidine synthase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004644 phosphoribosylglycinamide formyltransferase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0004749 ribose phosphate diphosphokinase activity pathway41014
GO:0046391 5-phosphoribose 1-diphosphate metabolic process GO:0051061 ADP reductase activity pathway41014
GO:0050427 3'-phosphoadenosine 5'-phosphosulfate metabolic process GO:0004020 adenylylsulfate kinase activity pathway41409
GO:0050427 3'-phosphoadenosine 5'-phosphosulfate metabolic process GO:0004781 sulfate adenylyltransferase (ATP) activity pathway41409

See Also

Mining Process Function Links from Reactome