Mining Process Function Links from Reactome: Difference between revisions
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== Methods == | |||
I used the reactome biopax exports. I took a connection between a biopax pathway and a reaction with corresponding GO xrefs to be evidence of a potential P->F link | |||
== Files == | |||
* [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] -- scratch directory for all process function links | * [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] -- scratch directory for all process function links | ||
** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] -- table with ALL reactome sourced P->F links | ** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] -- table with ALL reactome sourced P->F links |
Revision as of 16:49, 24 September 2008
Methods
I used the reactome biopax exports. I took a connection between a biopax pathway and a reaction with corresponding GO xrefs to be evidence of a potential P->F link
Files
- go/scratch/fp-links/ -- scratch directory for all process function links
- go/scratch/fp-links/reactome-all.txt -- table with ALL reactome sourced P->F links
- go/scratch/fp-links/reactome-all.obo -- obo file with ALL reactome sourced P->F links; load this in conjunction with GO in oboedit
- go/scratch/fp-links/reactome-all-imports.obo -- OBOEdit Imports file. Point OboEdit at this, it will load links + GO