https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&feed=atom&action=history
Mining Process Function Links from Reactome - Revision history
2024-03-29T09:48:55Z
Revision history for this page on the wiki
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https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15483&oldid=prev
Cjm at 21:28, 24 September 2008
2008-09-24T21:28:22Z
<p></p>
<a href="https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15483&oldid=15482">Show changes</a>
Cjm
https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15482&oldid=prev
Cjm: /* Files */
2008-09-24T21:05:57Z
<p><span dir="auto"><span class="autocomment">Files</span></span></p>
<a href="https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15482&oldid=15481">Show changes</a>
Cjm
https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15481&oldid=prev
Cjm at 20:49, 24 September 2008
2008-09-24T20:49:18Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:49, 24 September 2008</td>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== Methods ==</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">I used the reactome biopax exports. I took a connection between a biopax pathway and a reaction with corresponding GO xrefs to be evidence of a potential P->F link</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== Files ==</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] -- scratch directory for all process function links</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] -- scratch directory for all process function links</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] -- table with ALL reactome sourced P->F links</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] -- table with ALL reactome sourced P->F links</div></td></tr>
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Cjm
https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15480&oldid=prev
Cjm at 20:47, 24 September 2008
2008-09-24T20:47:28Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:47, 24 September 2008</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] <ins style="font-weight: bold; text-decoration: none;">-- scratch directory for all process function links</ins></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] <ins style="font-weight: bold; text-decoration: none;">-- table with ALL reactome sourced P->F links</ins></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** [http://www.geneontology.org/scratch/fp-links/reactome-all.obo go/scratch/fp-links/reactome-all.obo] -- obo file with ALL reactome sourced P->F links; load this in conjunction with GO in oboedit</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** [http://www.geneontology.org/scratch/fp-links/reactome-all-imports.obo go/scratch/fp-links/reactome-all-imports.obo] -- [[OBOEdit Imports]] file. Point OboEdit at this, it will load links + GO</ins></div></td></tr>
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Cjm
https://wiki.geneontology.org/index.php?title=Mining_Process_Function_Links_from_Reactome&diff=15479&oldid=prev
Cjm: New page: * [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] ** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] [[Categor...
2008-09-24T20:45:03Z
<p>New page: * [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/] ** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt] [[Categor...</p>
<p><b>New page</b></p><div><br />
* [http://www.geneontology.org/scratch/fp-links/ go/scratch/fp-links/]<br />
** [http://www.geneontology.org/scratch/fp-links/reactome-all.txt go/scratch/fp-links/reactome-all.txt]<br />
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[[Category:Ontology]]<br />
[[Category:Function-Process]]</div>
Cjm