Mining Process Function Links from Reactome
Methods
I used the reactome biopax exports. I took a connection between a biopax pathway and a reaction with corresponding GO xrefs to be evidence of a potential P->F link
Files
- go/scratch/fp-links/ -- scratch directory for all process function links
- go/scratch/fp-links/reactome-all.txt -- table with ALL reactome sourced P->F links
- go/scratch/fp-links/reactome-all.obo -- obo file with ALL reactome sourced P->F links; load this in conjunction with GO in oboedit
- go/scratch/fp-links/reactome-all-imports.obo -- OBOEdit Imports file. Point OboEdit at this, it will load links + GO