Mock-ups of new GOC Annotation pages (Deprecated): Difference between revisions

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* [http://www.geneontology.org/GO.annotation.shtml| Annotation Guide] CONTENT MOVED TO: [[Introduction to the GO Consortium annotation set]]
* [http://www.geneontology.org/GO.annotation.shtml| Annotation Guide] CONTENT MOVED TO: [[Introduction to the GO Consortium annotation set]]


* [http://www.geneontology.org/GO.evidence.shtml| Evidence Codes] Include Flow Chart?
* [http://www.geneontology.org/GO.evidence.shtml| Evidence Codes] Include Flow Chart? Need to include new PAINT evidence types. State objective of concordance with ECO?


* [http://www.geneontology.org/GO.annotation.conventions.shtml| Conventions] CONTENT MOVED TO: [[Qualifiers]],[[Database Objects]], [[References]]
* [http://www.geneontology.org/GO.annotation.conventions.shtml| Conventions] CONTENT MOVED TO: [[Qualifiers]],[[Database Objects]], [[References]]
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* [http://www.geneontology.org/GO.annotation.species_db.shtml| Species, Databases]
* [http://www.geneontology.org/GO.annotation.species_db.shtml| Species, Databases]


* [http://www.geneontology.org/GO.annotation_qc.shtml| QC Checks]
* [http://www.geneontology.org/GO.annotation_qc.shtml| QC Checks]. Perhaps the Annotation Quality Control section of: [http://www.geneontology.org/GO.format.annotation.shtml| File Format] could be displayed in this page


* [http://www.geneontology.org/GO.format.annotation.shtml| File Format]
* [http://www.geneontology.org/GO.format.annotation.shtml| File Format]


* [http://www.geneontology.org/cgi-bin/references.cgi| GO Reference Collection]
* [http://www.geneontology.org/cgi-bin/references.cgi| GO Reference Collection] As this lists GO_REFs, which are just one of the references allowed in the GO annotation format, perhaps this could be linked to from a new [[References]] page?





Revision as of 10:45, 26 January 2011

These pages are drafts of new GO Annotation pages for the GO Consortium website, that will eventually replace and improve upon the information provided by current documentation pages:

  • Evidence Codes Include Flow Chart? Need to include new PAINT evidence types. State objective of concordance with ECO?
  • QC Checks. Perhaps the Annotation Quality Control section of: File Format could be displayed in this page
  • GO Reference Collection As this lists GO_REFs, which are just one of the references allowed in the GO annotation format, perhaps this could be linked to from a new References page?





New Annotation Documentation Layout

Perhaps we could have an introduction to a generic GO annotation, with tabs displaying documentation for each of the fields; including:

--Database Objects

-- Qualifiers

-- References

-- Evidence Codes

Introduction to the GO Consortium annotation set

How External Communities can contribute annotations to the GO Consortium

Annotation Guidelines

-- Guidelines for literature-based curation

-- Guidelines for electronic annotation methods

-- Guidelines for manual, sequence based curation

GO Annotation Usage Guidelines


I realize that its not a page for the annotation group, however should one be created with deals with requesting new GO terms? Suggestions for content here: Requesting new GO terms

The Annotation Quality Control section of: http://www.geneontology.org/GO.format.annotation.shtml could be displayed as a separate page, and include a link to the Annotation QC page that Amelia has now generated - http://www.geneontology.org/GO.annotation_qc.shtml