Mock-ups of new GOC Annotation pages (Deprecated): Difference between revisions
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These pages are drafts of new GO Annotation pages for the GO Consortium website, that will eventually replace and improve upon the information provided by current documentation pages: | These pages are drafts of new GO Annotation pages for the GO Consortium website, that will eventually replace and improve upon the information provided by current documentation pages: | ||
* [http://www.geneontology.org/GO.annotation.shtml | * [http://www.geneontology.org/GO.annotation.shtml Annotation Guide] CONTENT MOVED TO: [[Introduction to the GO Consortium annotation set]] | ||
* [http://www.geneontology.org/GO.evidence.shtml | * [http://www.geneontology.org/GO.evidence.shtml Evidence Codes] Include Flow Chart? Need to include new PAINT evidence types. State objective of concordance with ECO? | ||
* [http://www.geneontology.org/GO.annotation.conventions.shtml | * [http://www.geneontology.org/GO.annotation.conventions.shtml Conventions] CONTENT MOVED TO: [[Qualifiers]],[[Database Objects]], [[References]] | ||
* [http://www.geneontology.org/GO.annotation.SOP.shtml | * [http://www.geneontology.org/GO.annotation.SOP.shtml SOPs] CONTENT MOVED TO: [[Guidelines for literature-based curation]], [[Guidelines for electronic annotation methods]], [[Guidelines for manual, sequence based curation]], [[How External Communities can contribute annotations to the GO Consortium]] | ||
* [http://www.geneontology.org/GO.annotation.species_db.shtml | * [http://www.geneontology.org/GO.annotation.species_db.shtml Species, Databases] | ||
* [http://www.geneontology.org/GO.annotation_qc.shtml | * [http://www.geneontology.org/GO.annotation_qc.shtml QC Checks]. Perhaps the Annotation Quality Control section of: [http://www.geneontology.org/GO.format.annotation.shtml| File Format] could be displayed in this page | ||
* [http://www.geneontology.org/GO.format.annotation.shtml | * [http://www.geneontology.org/GO.format.annotation.shtml File Format] | ||
* [http://www.geneontology.org/cgi-bin/references.cgi | * [http://www.geneontology.org/cgi-bin/references.cgi GO Reference Collection] As this lists GO_REFs, which are just one of the references allowed in the GO annotation format, perhaps this could be linked to from a new [[References]] page? | ||
Revision as of 10:46, 26 January 2011
These pages are drafts of new GO Annotation pages for the GO Consortium website, that will eventually replace and improve upon the information provided by current documentation pages:
- Annotation Guide CONTENT MOVED TO: Introduction to the GO Consortium annotation set
- Evidence Codes Include Flow Chart? Need to include new PAINT evidence types. State objective of concordance with ECO?
- Conventions CONTENT MOVED TO: Qualifiers,Database Objects, References
- SOPs CONTENT MOVED TO: Guidelines for literature-based curation, Guidelines for electronic annotation methods, Guidelines for manual, sequence based curation, How External Communities can contribute annotations to the GO Consortium
- QC Checks. Perhaps the Annotation Quality Control section of: File Format could be displayed in this page
- GO Reference Collection As this lists GO_REFs, which are just one of the references allowed in the GO annotation format, perhaps this could be linked to from a new References page?
New Annotation Documentation Layout
Perhaps we could have an introduction to a generic GO annotation, with tabs displaying documentation for each of the fields; including:
-- Qualifiers
-- References
Introduction to the GO Consortium annotation set
How External Communities can contribute annotations to the GO Consortium
-- Guidelines for literature-based curation
-- Guidelines for electronic annotation methods
-- Guidelines for manual, sequence based curation
GO Annotation Usage Guidelines
I realize that its not a page for the annotation group, however should one be created with deals with requesting new GO terms? Suggestions for content here: Requesting new GO terms
The Annotation Quality Control section of: http://www.geneontology.org/GO.format.annotation.shtml could be displayed as a separate page, and include a link to the Annotation QC page that Amelia has now generated - http://www.geneontology.org/GO.annotation_qc.shtml