Neurobiology Project: Difference between revisions
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* [https://sourceforge.net/tracker/?func=detail&aid=2891344&group_id=36855&atid=440764 New cc terms from NIFSTD - subcellular] | * [https://sourceforge.net/tracker/?func=detail&aid=2891344&group_id=36855&atid=440764 New cc terms from NIFSTD - subcellular] | ||
* [https://sourceforge.net/tracker/?func=detail&aid=2891355&group_id=36855&atid=440764 More new cc terms from NIFSTD - other] | * [https://sourceforge.net/tracker/?func=detail&aid=2891355&group_id=36855&atid=440764 More new cc terms from NIFSTD - other] | ||
* [https://sourceforge.net/tracker/?func=detail&aid=3198568&group_id=36855&atid=440764 Add axon pruning as synonym for neuron remodeling] | |||
* [https://sourceforge.net/tracker/?func=detail&aid=3204710&group_id=36855&atid=440764 Neurotransmitter receptor catabolic process] | |||
* [https://sourceforge.net/tracker/?func=detail&aid=3284647&group_id=36855&atid=440764 Retinal ganglion cell axon formation +regn. terms] | |||
* [https://sourceforge.net/tracker/?func=detail&aid=3285412&group_id=36855&atid=440764 Nerve-nerve transmission] | |||
* [https://sourceforge.net/tracker/?func=detail&aid=3290890&group_id=36855&atid=440764 Synaptic membrane] | * [https://sourceforge.net/tracker/?func=detail&aid=3290890&group_id=36855&atid=440764 Synaptic membrane] | ||
* [https://sourceforge.net/tracker/?func=detail&aid=3290896&group_id=36855&atid=440764 Dendritic spine maintenance] | * [https://sourceforge.net/tracker/?func=detail&aid=3290896&group_id=36855&atid=440764 Dendritic spine maintenance] | ||
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* [https://sourceforge.net/tracker/?func=detail&aid=3325195&group_id=36855&atid=440764 Request GO terms for synapse assembly] | * [https://sourceforge.net/tracker/?func=detail&aid=3325195&group_id=36855&atid=440764 Request GO terms for synapse assembly] | ||
* [https://sourceforge.net/tracker/?func=detail&aid=3341984&group_id=36855&atid=440764 Is an apical dendrite a part of apical part of cell?] | * [https://sourceforge.net/tracker/?func=detail&aid=3341984&group_id=36855&atid=440764 Is an apical dendrite a part of apical part of cell?] | ||
* [https://sourceforge.net/tracker/?func=detail&aid=3367659&group_id=36855&atid=440764 Synaptogenesis and protein establishment localization term] | |||
Revision as of 13:42, 1 August 2011
Summary
To expand and improve the GO biological processes terms and annotations for neurological processes including the core cellular processes for synaptic transmission, through to some of the higher order brain processes like cognition, and to fully augment GO cc with those terms in Neurological Information Framework (NIF)
Personnel
GO
- David H
- Tanya
- David O-S
- Alex
- Chris
- Paola
External experts
- Dr. John Chua (GWDG) - main contact
- Dr. Mario Albrecht (Max Planck Institute)
Main interest is in biological processes concerning the synapse, particularly the presynaptic active zone (human). See their recent review below for examples of genes and processes.
The architecture of an excitatory synapse. Chua JJ, Kindler S, Boyken J, Jahn R. J Cell Sci. 2010 Mar 15;123(Pt 6):819-23. Review. PMID:20200227
- Maryann Martone (NIF, University of California)
- Neurological cell components
Timeline
- Preliminary phone conference
- Collect SF items
- First draft of new terms
- Ontology content meeting with experts
- Second draft of new terms
- Implementation of new terms
- Annotations to new terms
SF items
- New cc terms from NIFSTD - subcellular
- More new cc terms from NIFSTD - other
- Add axon pruning as synonym for neuron remodeling
- Neurotransmitter receptor catabolic process
- Retinal ganglion cell axon formation +regn. terms
- Nerve-nerve transmission
- Synaptic membrane
- Dendritic spine maintenance
- General term for amyloid formation
- Beta-amyloid formation
- Dorsal interneuron caudal and rostral axon projection
- Lateral motor column neuron migration
- Regulation of synaptic vesicles clustering
- Positive regulation of synaptic vesicles clustering
- Negative regulation of synaptic vesicles clustering
- Request GO terms for synapse assembly
- Is an apical dendrite a part of apical part of cell?
- Synaptogenesis and protein establishment localization term