Noctua Manual: General Guidelines for Model Titles
Guidelines
- All GO-CAM models require a title
- While currently there are no strictly enforced rules for naming a model, curators should consider that the more informative the title is for end users, the easier it will be for them to browse a list of GO-CAM models and find what they're looking for
- Since not all Noctua users create causal models every time they curate, we've created guidelines for naming different types of models. These guidelines include the title automatically assigned to gene-centric models as part of the imports project.
Models Representing a Biological Process or Pathway
- Include:
- GO Biological Process term that best represents the biological process or pathway being modeled
- Additional biological context, such as cells, tissues, specific genes, if not already represented in the GO BP term but helpful for distinguishing models
- Species
- Examples:
- BMP signaling pathway via dpp-tkv/put (D.mel)
- 'de novo' AMP biosynthetic process (Mouse)
- Antifungal innate immune response in the hypodermis via transforming growth factor beta receptor signaling pathway (C. elegans)
- Include:
Gene-Centric Models
- Gene-centric models are generated as part of the imports project, in which annotation groups import all of their 'standard' manual GO annotations into Noctua.