Non-GOC Contributions Call 2016-04-27: Difference between revisions

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** Individuals and individual annotations
** Individuals and individual annotations
** GAF-formatted data, ontologies, and other bulk data
** GAF-formatted data, ontologies, and other bulk data
** Others?
** Others? MC: we should discuss our criteria for taking on datasets: is syntactic check enough? Do we want to run semantic ones, check the biology manually ones? We also need to discuss maintenance of datasets long term, what happens when annotations become stale and submitting groups have disappeared?
 
* A proposal for a repository/data format for bulk data. [https://github.com/geneontology/contributor-data-pool] (Seth)
* A proposal for a repository/data format for bulk data. [https://github.com/geneontology/contributor-data-pool] (Seth)
** "Atomic" resources or "grouping" resources
** "Atomic" resources or "grouping" resources
** Required and optional fields
** Required and optional fields
* Discussion of internal GO mechanisms to handle user data
* Discussion of internal GO mechanisms to handle user data
** Using drupal internally to manage external repository stages
** Using drupal internally to manage external repository stages
** "Spreadsheet" type collection
** "Spreadsheet" type collection
* Discussion of timeline to accomplish the above
* Discussion of timeline to accomplish the above


==Notes==
==Notes==

Revision as of 03:44, 27 April 2016


Agenda

  • Discussion of goals and use cases
    • Individuals and individual annotations
    • GAF-formatted data, ontologies, and other bulk data
    • Others? MC: we should discuss our criteria for taking on datasets: is syntactic check enough? Do we want to run semantic ones, check the biology manually ones? We also need to discuss maintenance of datasets long term, what happens when annotations become stale and submitting groups have disappeared?
  • A proposal for a repository/data format for bulk data. [1] (Seth)
    • "Atomic" resources or "grouping" resources
    • Required and optional fields
  • Discussion of internal GO mechanisms to handle user data
    • Using drupal internally to manage external repository stages
    • "Spreadsheet" type collection
  • Discussion of timeline to accomplish the above

Notes