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| There are many differences between OBO-Edit 1 and OBO-Edit 2. The OBO-Edit User Guide refers to version 1, and needs to be substantially revised before we can release OBO-Edit 2 to the public.
| | (Updated 19 Aug 2008) |
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| OBO-Edit users, we need your help! <b>Please add your name to the section or sections to which you are willing to contribute.</b> Feel free to add new sections to the list as well--this is definitely not a complete list. Don't worry about formatting or polishing your text. Just send whatever you have to Nomi, and she'll take care of making it pretty.
| | These are the help pages that still need to be updated (or, in some cases, written): |
| | | * Filtering.htm |
| * Cross-products - Jen
| | * The OBO OWL Adapter |
| * Drag and drop layout customization
| | * The OWL URL Reader |
| * Creating new layouts (and other general layout management) Jen: DONE
| | * The GO Association File Adapter |
| * The new search system
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| **Term search Jen: DONE
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| **Link search Jen: some screenshots sent in but still fairly confused about how this works. There is some good develop documentation on the link filter but I can't find it now. Still searching for it.
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| * The new rendering system (particularly the html expression syntax)
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| ** html expression syntax Jen: basic stuff DONE
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| ** would be useful also to have simpler version of [http://wiki.geneontology.org/index.php/OBO-Edit:_Arcana_for_User%27s_Guide John's Guide]
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| * Configurable Message Jen: DONE-ish - with rather lame example.
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| * Reasoner, cross products (xps): Chris M.
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| * Help for individual components: Nomi | |
| * User-configurable heat maps
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| * Hotkey system (see [http://sourceforge.net/mailarchive/forum.php?thread_name=BEB35549-C4BB-4346-A499-8D85B22FF2AB%40berkeleybop.org&forum_name=geneontology-oboedit-working-group John's summary]): Midori DONE
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| * Table of Contents: Jen: DONE. | |
| * Annotation Summary Component: Jen - I do not know how to work this. | |
| * Term Image Display Panel: Jen: DONE | |
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| == Some references that might be useful: == | | == Some references that might be useful: == |
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| * Browse the SourceForge SVN [http://geneontology.svn.sourceforge.net/viewvc/geneontology/java/ code repository] (which includes the oboedit code and also the code for the bbop and obo libraries that oboedit uses) | | * Browse the SourceForge SVN [http://geneontology.svn.sourceforge.net/viewvc/geneontology/java/ code repository] (which includes the oboedit code and also the code for the bbop and obo libraries that oboedit uses) |
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| -----
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| == Pages that can be used without changes ==
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| These are just my impressions; if anyone thinks any of these do need updating, speak up. -midori
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| *An_Introduction_to_OBO_Ontologies.htm
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| *Assigning_New_Roots.htm
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| *Backtick_Expressions.htm
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| *Basic_Concepts_and_Vocabulary.htm
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| *Cloning.htm
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| *Creating_Your_Own_GO_Slim_in_OBO_Edit.htm
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| *Cross_Products.htm
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| *Dangling_Intersection_Check.htm
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| *Dbxref_Check.htm
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| *Definition_Check.htm
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| *Deleting.htm
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| *Destroying.htm
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| *Disjointedness_Check.htm
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| *Editing.htm
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| *Editing_Obsoletes.htm
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| *Example_Scripts.htm
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| *Expression_Syntax.htm
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| *Filters.htm
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| *Frequently_Asked_Questions.htm (though of course we can add to this if we think of good Qs)
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| *How_ID_Generation_Works.htm
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| *ISA_Cycle_Check.htm
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| *Introduction_to_Adapters.htm
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| *Introduction_to_Cross_Products.htm
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| *Introduction_to_Expressions.htm
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| *Language_Concepts.htm
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| *Link_Filters_vs_Term_Filters.htm
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| *Name_Redundancy_Check.htm
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| *OBO_Edit_Specific_Variables.htm
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| *Other_Uses_of_Filters.htm
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| *Plugins.htm
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| *Reusing_Filters.htm
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| *Structural_Editing.htm
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| *Text_Checks.htm
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| *The_GO_Flat_File_Adapter.htm
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| *The_Serial_Adapter.htm
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| *What_is_OBO_Edit_.htm
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| *What_is_an_ontology_.htm
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| *Working_with_Obsoletes.htm
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| *obo2flat.htm
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| *obo2obo.htm
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| *obodiff.htm
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| <br>
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| <hr>
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| Return to [[OBO-Edit]] main page | | Return to [[OBO-Edit]] main page |