OE2 Benchmarking by Users

Initial Reasoner Run

Jen Deegan

Windows laptop (32-bit XP):
single core Intel processor 1.73 GHz,
1.99 GB RAM (-Xmx1152M)
Using gene_ontology_write.obo cvs revision 1.377 with Rule Based Reasoner (not including time to load file):

Total reasoner time = 40051.836756 ms
time in rule (org.obo.reasoner.rbr.SubPropertyRule@1c1364a) = 0.0 ms
time in rule (org.obo.reasoner.rbr.LinkCompositionRule@1624cae) = 27629.723889 ms
time in rule (org.obo.reasoner.rbr.PropertyIntersectionRule@ec120d) = 0.0 ms
time in rule (org.obo.reasoner.rbr.IntersectionRule@954f73) = 0.481067 ms
reasoning finished in 41422 milliseconds

Apple Desktop (Mac OS X 10.4.11)
2 x 3GHz Dual-Core Intel processor
2GB RAM (-Xmx1152M)
Using gene_ontology_write.obo cvs revision 1.377 with Rule Based Reasoner (not including time to load file):

Total reasoner time = 21993.166 ms
time in rule (org.obo.reasoner.rbr.SubPropertyRule@f7ceaa) = 0.0 ms
time in rule (org.obo.reasoner.rbr.LinkCompositionRule@5df5c4) = 15683.829 ms
time in rule (org.obo.reasoner.rbr.PropertyIntersectionRule@7b28c5) = 0.0 ms
time in rule (org.obo.reasoner.rbr.IntersectionRule@b1c5c3) = 0.248 ms
reasoning finished in 22293 milliseconds

Editing with Reasoner

In order to figure out the speed of editing with the reaonser across the array of machines that we use, I am going to set up some standard tests.