OEWG 20090625: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
(10 intermediate revisions by 3 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:OBO-Edit working group]] | |||
OBO-Edit Working Group Meeting, Thursday June 25th, 2009 8.30 a.m. PST | OBO-Edit Working Group Meeting, Thursday June 25th, 2009 8.30 a.m. PST | ||
Line 13: | Line 14: | ||
== | ==Minutes== | ||
Present: Amina, Chris, Harold, Melissa, Jen, Midori, David OS [Hope I didn't miss anyone!] | |||
* Update from Amina about what she's working on: | |||
** 1. Fixing assert implied links | |||
** 2. Ability to switch of incremental reasoning. | |||
*** Think this is now working, but need to get Chris to check that the fix is safe. | |||
** 3. Making make viewing transitive relations configurable in the tree editor as they are now filtered out. | |||
** DS: But aren't they visible already? I have non-trans relations in fly anatomy and they are visible in OTE. | |||
** Chris: Think the problem is only seen if you have a term that only has non-transitive link(s) to parents. | |||
* Amina: Items discussed during the webex session with Tanya and DavidH on wednesday morning. | |||
** Apparently lots of complaints - including: | |||
*** Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails. | |||
**** Feature request: Optional Verification check to check if is_a child has same namespace as parent. | |||
** Discussion of how this related to disjunction GO root nodes | |||
*** AI: Check if it now possible to make root terms disjoint without screwing up display in OTE? | |||
** Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?] | |||
** Updates to user dictionary still broken | |||
*** Amina thinks this is fixed in 2.1 | |||
*** Jen reports additional (perhaps windows specific?) problem of verification manager failing to read any dictionaries from her config folder. | |||
* Update to Java version 6/1.6 from version 5/1.5. Amina to demo/walk all users through this, if required. | |||
** For mac users - open java preferences and drag Java 6 to top of list (note If you have the latest mac system update, java6 (AKA 1.6) should be installed. This is easy to reverse if causes problems for other software. | |||
* Last discussion item - tentative meeting schedule | |||
** http://wiki.geneontology.org/index.php/OBO-Edit_Working_Group_weekly_meeting_minutes/agenda_rota | |||
** Doodle poll results: http://www.doodle.com/6tdzhy9av57yf98b <br> | |||
* Harold:Perhaps alternating with a bi-weekly schedule? | |||
* Chris prefers alternating on a weekly basis. | |||
* Amina & Chris - We need to be able to fit Jane into at least some meeting. She has a lot of bugs she wants fixing | |||
* Decision: Next week meet Thursday again and then decide. | |||
* Demo by Jen: Tag filtering. | |||
* Midori: Please could you remove id from the filter options? | |||
*** General agreement to this. | |||
** Feature request: save implied links [for presentation/save all] is confusing - can we get rid of the dialogue box altogether and have the 'for presentation' behavior be the default. | |||
*** Seems to be general aggreement with this suggestions | |||
*** AI: Amina - find out what does realize implied links do? If we don't need it delete | |||
* Harold's interface issues | |||
** 1. Can we make the icons at the top of the windows be larger? Some people find them way too small. | |||
*** Amina - trade off - could cause problems for screen real estate | |||
*** Jen - Perhaps we should make it configurable | |||
*** General agreement to configurable option for this? | |||
** 2. Can we have change the windowing setup so that detached windows don't always stay on top? | |||
* Discussion of graph viewing and graph editor: | |||
** AI: Jen has had problems showing all ancestors to root with graph editor- needs to investigate further to write bug report. | |||
** Graph viewer - still buggy. Doesn't work with RBR, needs LBL to display complete path to root. (Already have tickets for these). | |||
==Action Items== | ==Action Items== | ||
* AI: Check if it now possible to make root terms disjoint without screwing up display in OTE? | |||
** UPDATE: DOS checked. Appears to now work fine. | |||
* Feature request: Simplify 'save implied links' interface so that it doesn't have different options and behaves as 'save for presentation' currently does. | |||
* AI: Amina - find out what does realize implied links do? If we don't need it delete | |||
* Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?] | |||
* Feature request: Optional Verification check to check if is_a child has same namespace as parent. | |||
* Feature request: Make window icon size configurable | |||
* Feature request: Fix it so detatched windows are not always on top | |||
** AI: Jen has had problems showing all ancestors to root with graph editor- needs to investigate further to write bug report. | |||
==Links== | ==Links== | ||
[[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] | [[OBO-Edit_Working_Group_Meeting_Agenda_and_Minutes|Back to OEWG Meeting agenda and minutes List]] |
Latest revision as of 16:50, 30 June 2014
OBO-Edit Working Group Meeting, Thursday June 25th, 2009 8.30 a.m. PST
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair: Midori
Minutes: DavidOS
Attendees:
Action items carried over
Minutes
Present: Amina, Chris, Harold, Melissa, Jen, Midori, David OS [Hope I didn't miss anyone!]
- Update from Amina about what she's working on:
- 1. Fixing assert implied links
- 2. Ability to switch of incremental reasoning.
- Think this is now working, but need to get Chris to check that the fix is safe.
- 3. Making make viewing transitive relations configurable in the tree editor as they are now filtered out.
- DS: But aren't they visible already? I have non-trans relations in fly anatomy and they are visible in OTE.
- Chris: Think the problem is only seen if you have a term that only has non-transitive link(s) to parents.
- Amina: Items discussed during the webex session with Tanya and DavidH on wednesday morning.
- Apparently lots of complaints - including:
- Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails.
- Feature request: Optional Verification check to check if is_a child has same namespace as parent.
- Possible problem with assignement of wrong namespace during editing. OE2 is meant to automatically assign new terms namespace of their parent. David H thinks this sometimes fails.
- Discussion of how this related to disjunction GO root nodes
- AI: Check if it now possible to make root terms disjoint without screwing up display in OTE?
- Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?]
- Updates to user dictionary still broken
- Amina thinks this is fixed in 2.1
- Jen reports additional (perhaps windows specific?) problem of verification manager failing to read any dictionaries from her config folder.
- Apparently lots of complaints - including:
- Update to Java version 6/1.6 from version 5/1.5. Amina to demo/walk all users through this, if required.
- For mac users - open java preferences and drag Java 6 to top of list (note If you have the latest mac system update, java6 (AKA 1.6) should be installed. This is easy to reverse if causes problems for other software.
- Last discussion item - tentative meeting schedule
- Harold:Perhaps alternating with a bi-weekly schedule?
- Chris prefers alternating on a weekly basis.
- Amina & Chris - We need to be able to fit Jane into at least some meeting. She has a lot of bugs she wants fixing
- Decision: Next week meet Thursday again and then decide.
- Demo by Jen: Tag filtering.
- Midori: Please could you remove id from the filter options?
- General agreement to this.
- Feature request: save implied links [for presentation/save all] is confusing - can we get rid of the dialogue box altogether and have the 'for presentation' behavior be the default.
- Seems to be general aggreement with this suggestions
- AI: Amina - find out what does realize implied links do? If we don't need it delete
- Harold's interface issues
- 1. Can we make the icons at the top of the windows be larger? Some people find them way too small.
- Amina - trade off - could cause problems for screen real estate
- Jen - Perhaps we should make it configurable
- General agreement to configurable option for this?
- 2. Can we have change the windowing setup so that detached windows don't always stay on top?
- 1. Can we make the icons at the top of the windows be larger? Some people find them way too small.
- Discussion of graph viewing and graph editor:
- AI: Jen has had problems showing all ancestors to root with graph editor- needs to investigate further to write bug report.
- Graph viewer - still buggy. Doesn't work with RBR, needs LBL to display complete path to root. (Already have tickets for these).
Action Items
- AI: Check if it now possible to make root terms disjoint without screwing up display in OTE?
- UPDATE: DOS checked. Appears to now work fine.
- Feature request: Simplify 'save implied links' interface so that it doesn't have different options and behaves as 'save for presentation' currently does.
- AI: Amina - find out what does realize implied links do? If we don't need it delete
- Tanya feature request: NSBP check (MFBP check???) [DOS: not clear to me what this refers to - perhaps someone can fill in the details?]
- Feature request: Optional Verification check to check if is_a child has same namespace as parent.
- Feature request: Make window icon size configurable
- Feature request: Fix it so detatched windows are not always on top
- AI: Jen has had problems showing all ancestors to root with graph editor- needs to investigate further to write bug report.