OEWG 20091117: Difference between revisions
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==== Bugs ==== | ==== Bugs ==== | ||
I am generating cross-product definitions in the Cell Ontology. To do this, I load the Cell ontology (CL), the three GO ontologies, PR0 and the Uberon ontology. I accidentally generated a cyclical relationship between the two terms after reasoning. I *think* this resulted from using two related GO processes in the cross-product definition but am not sure due to some buggy issues. | I am generating cross-product definitions in the Cell Ontology. To do this, I load the Cell ontology (CL), the three GO ontologies, PR0 and the Uberon ontology. I accidentally generated a cyclical relationship between the two terms after reasoning (see pictures). I *think* this resulted from using two related GO processes in the cross-product definition but am not sure due to some buggy issues. | ||
# The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning. This is an issue Amina and Chris are aware of. | # The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning. This is an issue Amina and Chris are aware of. | ||
# Perhaps related... the Parent editor fails to show implied links, even when the checkbox is checked. | # Perhaps related... the Parent editor fails to show implied links, even when the checkbox is checked. | ||
# Tree editor fails to show '''any''' relationship between the two terms | # Tree editor fails to show '''any''' relationship between the two terms. | ||
# Should have the verification manager prevented this cyclical relationship from occurring? The reasoner stopped running checks due to the number of errors (200) Most of these errors are miss-spellings in Uberon. | # Should have the verification manager prevented this cyclical relationship from occurring? The reasoner stopped running checks due to the number of errors (200) Most of these errors are miss-spellings in Uberon. | ||
[[File:Circular_myeloid_dendritic_cell-no_reasoner.jpg| | [[File:Circular_myeloid_dendritic_cell-no_reasoner.jpg|200px|thumb|left|Before reasoning]] | ||
[[File:Circular_myeloid_dendritic_cell2.jpg|200px|thumb|left|After reasoning]] | |||
[[File:Tree_editor_pic.jpg|200px|thumb|left|Tree editor-After reasoning]] | |||
==== Features ==== | ==== Features ==== |
Revision as of 11:35, 17 November 2009
OBO-Edit Working Group, Tuesday November 17th, 2009 8.30 a.m. PDT
Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425
Agenda/Chair:
Minutes:
Attendees:
Action items carried over
Discussion items
Bugs
I am generating cross-product definitions in the Cell Ontology. To do this, I load the Cell ontology (CL), the three GO ontologies, PR0 and the Uberon ontology. I accidentally generated a cyclical relationship between the two terms after reasoning (see pictures). I *think* this resulted from using two related GO processes in the cross-product definition but am not sure due to some buggy issues.
- The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning. This is an issue Amina and Chris are aware of.
- Perhaps related... the Parent editor fails to show implied links, even when the checkbox is checked.
- Tree editor fails to show any relationship between the two terms.
- Should have the verification manager prevented this cyclical relationship from occurring? The reasoner stopped running checks due to the number of errors (200) Most of these errors are miss-spellings in Uberon.