OEWG 20091117: Difference between revisions

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# Tree editor fails to show '''any''' relationship between the two terms.
# Tree editor fails to show '''any''' relationship between the two terms.
# Should have the verification manager prevented this cyclical relationship from occurring?  The reasoner stopped running checks due to the number of errors (200) Most of these errors are miss-spellings in Uberon.
# Should have the verification manager prevented this cyclical relationship from occurring?  The reasoner stopped running checks due to the number of errors (200) Most of these errors are miss-spellings in Uberon.
 
<gallery>
[[File:Circular_myeloid_dendritic_cell-no_reasoner.jpg|200px|thumb|left|Before reasoning]]
File:Circular_myeloid_dendritic_cell-no_reasoner.jpg|Before reasoning
[[File:Circular_myeloid_dendritic_cell2.jpg|200px|thumb|left|After reasoning]]
File:Circular_myeloid_dendritic_cell2.jpg|After reasoning
[[File:Tree_editor_pic.jpg|200px|thumb|left|Tree editor-After reasoning]]
File:Tree_editor_pic.jpg|Tree editor-After reasoning
</gallery>


==== Features ====
==== Features ====

Revision as of 11:44, 17 November 2009

OBO-Edit Working Group, Tuesday November 17th, 2009 8.30 a.m. PDT

Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425

Agenda/Chair:
Minutes:
Attendees:

Action items carried over

Discussion items

Bugs

I am generating cross-product definitions in the Cell Ontology. To do this, I load the Cell ontology (CL), the three GO ontologies, PR0 and the Uberon ontology. I accidentally generated a cyclical relationship between the two terms after reasoning (see pictures). I *think* this resulted from using two related GO processes in the cross-product definition but am not sure due to some buggy issues.

  1. The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning. This is an issue Amina and Chris are aware of.
  2. Perhaps related... the Parent editor fails to show implied links, even when the checkbox is checked.
  3. Tree editor fails to show any relationship between the two terms.
  4. Should have the verification manager prevented this cyclical relationship from occurring? The reasoner stopped running checks due to the number of errors (200) Most of these errors are miss-spellings in Uberon.

Features

Consortium meeting

Action Items

Links

Back to OEWG Meeting agenda and minutes List