Difference between revisions of "OEWG 20091117"

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(Bugs)
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File:Tree_editor_pic.jpg|Tree editor-After reasoning
 
File:Tree_editor_pic.jpg|Tree editor-After reasoning
 
</gallery>
 
</gallery>
 +
 +
 +
 +
[Term]
 +
id: CL:0000840
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name: immature myeloid dendritic cell
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namespace: cell
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def: "An immature cell of the myeloid dendritic cell lineage, characterized by high levels of antigen uptake via endocytosis, macropinocytosis, and phagocytosis, and typically found resident in the tissues." [GOC:add, PMID:9521319]
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is_a: CL:0000782 ! myeloid dendritic cell
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intersection_of: CL:0000782 ! myeloid dendritic cell
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intersection_of: capable_of GO:0006897 ! endocytosis
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relationship: develops_from CL:0000576 ! monocyte
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 +
[Term]
 +
id: CL:0000841
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name: mature myeloid dendritic cell
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namespace: cell
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def: "A mature cell of the myeloid dendritic cell lineage, characterized by a high capacity for antigen presentation and typically found in a lymph node." [GOC:add, GOC:tfm, PMID:9521319]
 +
is_a: CL:0000782 ! myeloid dendritic cell
 +
intersection_of: CL:0000782 ! myeloid dendritic cell
 +
intersection_of: capable_of GO:0019882 ! antigen processing and presentation
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relationship: develops_from CL:0000840 ! immature myeloid dendritic cell
  
 
==== Features ====
 
==== Features ====

Revision as of 09:46, 17 November 2009

OBO-Edit Working Group, Tuesday November 17th, 2009 8.30 a.m. PDT

Conference call details:
US: 1-888-727-6732
Outside US: 1-719-867-3417
pin: 601425

Agenda/Chair: Amina
Minutes: Jen
Attendees:

Action items carried over

Discussion items

Bugs

I (Terry Meehan, MGI) am generating cross-product definitions in the Cell Ontology. To do this, I load the Cell ontology (CL), the three GO ontologies, PR0 and the Uberon ontology. I accidentally generated a cyclical relationship between the two terms after reasoning (see pictures). I *think* this resulted from using two related GO processes in the cross-product definition but am not sure due to some buggy issues.

  1. The "Explanation" feature both in the graph editor and in the Assert Implied links panel fail to explain reasoning. This is an issue Amina and Chris are aware of.
  2. Perhaps related... the Parent editor fails to show implied links, even when the checkbox is checked.
  3. Tree editor fails to show any relationship between the two terms.
  4. Should have the verification manager prevented this cyclical relationship from occurring? The reasoner stopped running checks due to the number of errors (>200). Most of these errors are miss-spellings in Uberon.


[Term] id: CL:0000840 name: immature myeloid dendritic cell namespace: cell def: "An immature cell of the myeloid dendritic cell lineage, characterized by high levels of antigen uptake via endocytosis, macropinocytosis, and phagocytosis, and typically found resident in the tissues." [GOC:add, PMID:9521319] is_a: CL:0000782 ! myeloid dendritic cell intersection_of: CL:0000782 ! myeloid dendritic cell intersection_of: capable_of GO:0006897 ! endocytosis relationship: develops_from CL:0000576 ! monocyte

[Term] id: CL:0000841 name: mature myeloid dendritic cell namespace: cell def: "A mature cell of the myeloid dendritic cell lineage, characterized by a high capacity for antigen presentation and typically found in a lymph node." [GOC:add, GOC:tfm, PMID:9521319] is_a: CL:0000782 ! myeloid dendritic cell intersection_of: CL:0000782 ! myeloid dendritic cell intersection_of: capable_of GO:0019882 ! antigen processing and presentation relationship: develops_from CL:0000840 ! immature myeloid dendritic cell

Features

Consortium meeting

Action Items

Links

Back to OEWG Meeting agenda and minutes List